PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462884741
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 249aa    MW: 26479.6 Da    PI: 7.9675
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462884741genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.18.6e-2985144159
                ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                ++Dgy+WrKYGqK+ ++++ pr+Y+rC++a +Cpvkkkv++saed +v++ tYegeH+h+
  462884741  85 VKDGYQWRKYGQKVTRDNPSPRAYFRCAYApSCPVKKKVQKSAEDSSVLVATYEGEHTHP 144
                58***************************99****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081125.84480146IPR003657WRKY domain
SuperFamilySSF1182903.01E-2581146IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.8E-2882146IPR003657WRKY domain
SMARTSM007741.3E-3385145IPR003657WRKY domain
PfamPF031061.8E-2486144IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MEADAEPDRK AGARATSSSM TDEERERAES PERSNSSDGG NRKCADADRA EPPPPTLSDG  60
AASCKRIKVS RVCTRIDPAD TMLTVKDGYQ WRKYGQKVTR DNPSPRAYFR CAYAPSCPVK  120
KKVQKSAEDS SVLVATYEGE HTHPCPTRAG ELLPGGVATR SGSVPCSISI NSSSSGPTIT  180
LDLTKNGAGG GGVRVLGADQ APDLKKLCRE IASPEFRTAL VEQMASVLTS NTDFTGALAA  240
AILRQLPEY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-19851461474WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ2, ECO:0000250|UniProtKB:Q6QHD1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462884741
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (By similarity). Induced by pathogen infection (e.g. M.grisea and X.oryzae pv. oryzae (Xoo)) (PubMed:16528562). Accumulates after treatment with benzothiadiazole (BTH) and salicylic acid (SA) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ2, ECO:0000269|PubMed:16528562}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0353046e-87BT035304.1 Zea mays full-length cDNA clone ZM_BFb0054B07 mRNA, complete cds.
GenBankBT0684936e-87BT068493.1 Zea mays full-length cDNA clone ZM_BFb0234B18 mRNA, complete cds.
GenBankEU5187726e-87EU518772.1 Zea mays WRKY DNA-binding protein (WRKY) mRNA, complete cds.
GenBankKJ7268106e-87KJ726810.1 Zea mays clone pUT3166 WRKY transcription factor (WRKY53) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462384.11e-110WRKY transcription factor WRKY76
SwissprotQ6IEK53e-97WRK76_ORYSI; WRKY transcription factor WRKY76
TrEMBLC5XCU51e-108C5XCU5_SORBI; Uncharacterized protein
STRINGSb02g024760.11e-109(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66603552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.13e-46WRKY DNA-binding protein 40