PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462884866
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family GRAS
Protein Properties Length: 144aa    MW: 16486.8 Da    PI: 6.5173
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462884866genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS160.91.1e-491144230374
       GRAS 230 lvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpl 329
                +vk+l+Pk+v++veqea++n+++Fl+rf e  +yysalfdsl+a+lpres +r++vEr++l+reivn++aceg +r+er e ++kWr+r+++aGF p p+
  462884866   1 MVKGLQPKLVTLVEQEANTNTSPFLTRFREVYDYYSALFDSLDATLPRESPDRMNVERQCLAREIVNILACEGPDRVERYEVAGKWRARMGMAGFVPSPF 100
                69************************************************************************************************** PP

       GRAS 330 sekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                + ++ + +++ l+ +  d y+ e+ ++ l +gW d++L++ SaW+
  462884866 101 NGNVIDGIRSQLKSYC-DMYKFEKVHDGLHFGWGDKTLIVSSAWQ 144
                ***************9.66*************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035143.9E-471144IPR005202Transcription factor GRAS
PROSITE profilePS5098526.2631125IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MVKGLQPKLV TLVEQEANTN TSPFLTRFRE VYDYYSALFD SLDATLPRES PDRMNVERQC  60
LAREIVNILA CEGPDRVERY EVAGKWRARM GMAGFVPSPF NGNVIDGIRS QLKSYCDMYK  120
FEKVHDGLHF GWGDKTLIVS SAWQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-221143237378Protein SCARECROW
5b3h_A4e-221143236377Protein SCARECROW
5b3h_D4e-221143236377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462884866
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004962026.14e-94scarecrow-like protein 1
SwissprotQ9SDQ32e-61SCL1_ARATH; Scarecrow-like protein 1
TrEMBLK3Z5179e-93K3Z517_SETIT; Uncharacterized protein
STRINGSi021635m1e-93(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56403354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.18e-64SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]