PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462885036

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

WOX

Protein Properties

Length: 256aa MW: 27920.6 Da PI: 8.5758

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462885036	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	49.5	7.2e-16	28	88	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++++eq+ +Le+ F++ +p ++e +++ + l + +++V++WFqNrR + ++ 462885036 28 RPRWAPKPEQILILESIFNSgMVNPAKDETARIRRLLerfgAVRDANVFYWFQNRRSRSRR 88 89***************99***********************************997 PP
2	Wus_type_Homeobox	104.5	6.9e-34	27	89	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ar+RW+P+peQi iLe++++sG+++P+k+e+ ri++ Le++G+++d+NVfyWFQNr++R+r++ 462885036 27 ARPRWAPKPEQILILESIFNSGMVNPAKDETARIRRLLERFGAVRDANVFYWFQNRRSRSRRR 89 689**********************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.7E-8	17	89	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.75E-12	23	90	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.564	24	89	IPR001356	Homeobox domain
SMART	SM00389	6.6E-6	26	93	IPR001356	Homeobox domain
Pfam	PF00046	1.5E-13	28	88	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048830	Biological Process	adventitious root development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MDSHHAAQAP PAHRCGGGEG ETTTTTARPR WAPKPEQILI LESIFNSGMV NPAKDETARI 60 RRLLERFGAV RDANVFYWFQ NRRSRSRRRA XXXXXXXXSP PPPSPATSTS ATARHTTTSC 120 TGTPSRRPCR RRGDLFAISR QMGLLPRGAG DDHRCGGYTA NDASQLMSYQ PTGATTSIQV 180 FINGVVYEAP GGGALLDLAG TFGLHSSGEI LPVNEHGVLV KSLQMGECYY LVGFEIDLIS 240 CALPCRMMLQ DVCYEA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462885036

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005249	1e-85	AP005249.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0087F21.
GenBank	AP014964	1e-85	AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBank	CP012616	1e-85	CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021321152.1	8e-85	WUSCHEL-related homeobox 10
Swissprot	A2YST1	3e-77	WOX10_ORYSI; WUSCHEL-related homeobox 10
TrEMBL	A0A1E5VIR5	5e-88	A0A1E5VIR5_9POAL; WUSCHEL-related homeobox 10
STRING	Sb07g007600.1	1e-89	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1078	37	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17810.2	3e-28	WUSCHEL related homeobox 12