PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462885262
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C2H2
Protein Properties Length: 113aa    MW: 11465 Da    PI: 7.9891
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462885262genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000163049120
               EEETTTTEEESSHHHHHHHH CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHi 20
               ++C+ Cgk+F++   L  H 
  462885262 30 HECHVCGKTFPTGQALGGHK 49
               79*********988887766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.61E-62954No hitNo description
PfamPF139127.0E-142954IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.0973052IPR007087Zinc finger, C2H2
PROSITE patternPS0002803252IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
MTTSAVTPAS SSNGGEATSS GGGKASAAAH ECHVCGKTFP TGQALGGHKR CHYDGTIGSA  60
AAPPVKHKPG RVAIGFDLNL PALPDIAERC TADEDQEVLS PIAFKKPRLM IPA
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462885262
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9557422e-45EU955742.1 Zea mays clone 1544525 zinc-finger protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808181.12e-39zinc finger protein 1-like
SwissprotQ424304e-21ZFP1_WHEAT; Zinc finger protein 1
TrEMBLA0A2S3HEY65e-38A0A2S3HEY6_9POAL; Uncharacterized protein
TrEMBLA0A2T7EIJ05e-38A0A2T7EIJ0_9POAL; Uncharacterized protein
STRINGPavir.J06981.1.p2e-34(Panicum virgatum)
STRINGMLOC_54674.18e-35(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.13e-18salt tolerance zinc finger