PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462885352
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 870aa    MW: 95011.1 Da    PI: 6.5065
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462885352genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.30.000676957321355
                HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                R+ i +++ eLrel+P+ a      K s  + Lek+++++  Lq
  462885352 695 RQLIQDRIKELRELVPNgA------KCSIDALLEKTIKHMLFLQ 732
                67799************66......999999********99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.8E-296154IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088810.804682731IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-4695740IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 870 aa     Download sequence    Send to blast
MAVGDALRRL CEEACWSYAV FWKAIGAADP VHLVWEDGYC GHTSCSAGSE ASEIGREQGS  60
SVCTLVRKVM ASQVHVVGEG SIGRAAVTGN HLWIVQDGVN DHKLRSEVAA EMNHQFLAGI  120
QTIAIVPVLP RGVLQLGSTS AVLENTNLVL QYKKLCSQLN NRSSMASSSS VKSDMNQKVQ  180
SRPSNAPPSI YTADACSKFF SGSPVPYEQC YGLHATTVSN STLSNTGRNA SMLMVAQKNG  240
QPVKEHILYA PDLKFRQQTT YCDTRPESNT QSSVVSSGFF SSVSTGMEKH PLMRSNSGRL  300
EQGNMEDFSD PRNVLLKSLA CRDPLVHENA NTALLHSRSQ APDFLNGQGN FDFLPGGSRV  360
VKGNLYASAE NQMLGHRCNS ISGMTGYRPT ISYKIPQSAQ LVMKMESPKR ETVQDSVALP  420
GSDIKVSCGL RTGVSQENQM SSSDPVCQKM VNEGNDPADV IVQVVKNMDS RKLPDTSDER  480
AASLLVDPTT ENDLFDMFGT EFHQLYSSVD NDLTWKAAKP ESSTRDVPES SVHHDTSRAY  540
DSVGDFPYSG IFSLTDTDQL LDAVISNVNP GGKQISGDSA SCKTSLTDIP SSSYCRSKET  600
KHCESSGAPP LPMKNELSVS NFVKQPCFLE KAEDGCLSQN NGMQKSQIRL WIESGQNMKC  660
ESVSASNSKG VDTSSKSSRK RSRPGENPKP RPKDRQLIQD RIKELRELVP NGAKCSIDAL  720
LEKTIKHMLF LQSVTKHADN LKDSNESKIL GGENGPLKDC FEGGATWAFD VGSQSMTCPI  780
IVEDLERPRQ MLVEMLCEDR GIFLEIADFI KGLGLTILRG VMEARKNKIW ARFTVEANRD  840
VTRMEIFLSL MRLLEPSCDG GGPGENPNNV
Cis-element ? help Back to Top
SourceLink
PlantRegMap462885352
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808394.10.0transcription factor LHW-like
TrEMBLA0A1E5WGB50.0A0A1E5WGB5_9POAL; Transcription factor LHW
STRINGSb08g003770.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26543242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.12e-48conserved peptide upstream open reading frame 7