PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462885559
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family E2F/DP
Protein Properties Length: 246aa    MW: 27799.5 Da    PI: 8.1937
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462885559genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP86.61.8e-2718104371
    E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse.....................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                +++Lr++++k   ++ek+e+ g++t+neva+eLv+e                     d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  462885559  18 NRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfsdpnnnfespdpenpnaqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 104
                689*******...*****999************************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.8E-4512110IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013727.0E-3816104IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.2E-2519104IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.36E-2019105IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144585.02E-32109197IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440744.18E-32111197No hitNo description
SMARTSM011381.3E-41111235IPR014889Transcription factor DP, C-terminal
PfamPF087819.4E-30112197IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MSKKKKRGSR AVGPDKGNRG LRQFSMKVCE KVESKGRTTY NEVADELVAE FSDPNNNFES  60
PDPENPNAQQ YDEKNIRRRV YDALNVLMAM DIISKDKKEI QWKGLPRTSI SDVEELKTEL  120
VGLKGRIEKK SAYLQELQDQ YVGLQNLIRR NEELYGSGNT PSGGVALPFI LVQTRPHATV  180
EVEISEDMQL VHFDFNRIVK AEPPADAPGS WNGNTGISMR PRTVMPRMAR ETVRNEGCPI  240
IGQHLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B8e-3810109193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462885559
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798098.11e-136transcription factor-like protein DPB isoform X2
SwissprotQ9FNY21e-113DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A2S3IU501e-133A0A2S3IU50_9POAL; Uncharacterized protein
TrEMBLC0PCD81e-133C0PCD8_MAIZE; Transcription factor-like protein DPB
TrEMBLK0DF961e-133K0DF96_MAIZE; E2F6 E2F-DP type transcription factor (Fragment)
STRINGGRMZM2G063387_P011e-134(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-115Transcription factor DP