PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462885943
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 185aa    MW: 20025 Da    PI: 6.6281
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462885943genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.64e-3199157159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYG+K+vk+s++pr+YYrC+++gC+vkk+ver+++dp++v+++Yeg Hnh 
  462885943  99 LDDGYKWRKYGKKSVKNSPNPRNYYRCSTEGCNVKKRVERDRDDPSYVVTMYEGVHNHA 157
                59********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081131.30794159IPR003657WRKY domain
SuperFamilySSF1182909.94E-2895159IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.4E-3195159IPR003657WRKY domain
SMARTSM007742.6E-3599158IPR003657WRKY domain
PfamPF031061.3E-24100156IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MALVVEARAT TAAASFSFSS QQARGDAMEH HPHPYFNGAS AFFPPPAAAG PAQLDVFDYL  60
SDPAEDAGGA DPVREPDRAF SRSAAAAAGG LGGAEEDVLD DGYKWRKYGK KSVKNSPNPR  120
NYYRCSTEGC NVKKRVERDR DDPSYVVTMY EGVHNHATPG TIYYASQDAA SGRFFVSRMH  180
HQLGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-2484159277Probable WRKY transcription factor 4
2lex_A1e-2484159277Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462885943
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9587322e-73EU958732.1 Zea mays clone 1711977 WRKY7 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020195304.13e-57probable WRKY transcription factor 59 isoform X1
TrEMBLA0A3B6EH577e-56A0A3B6EH57_WHEAT; Uncharacterized protein
TrEMBLA0A3B6GXR37e-56A0A3B6GXR3_WHEAT; Uncharacterized protein
TrEMBLA0A446NKB17e-56A0A446NKB1_TRITD; Uncharacterized protein
STRINGTraes_3B_41047D5E6.23e-56(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.16e-34WRKY DNA-binding protein 51