PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462886115

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

NAC

Protein Properties

Length: 222aa MW: 25130.6 Da PI: 9.6886

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462886115	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	156.6	1.1e-48	11	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kg 97 +ppGfrFhP+d+elv +yL +k++g+ + v + +vd++k+ePwdLp ewyfFs rd+ky+ g+r+nrat+sgyWkatgkd++v++ ++ 462886115 11 MPPGFRFHPRDDELVLDYLLQKLSGSARAHSGVaMVDVDLNKCEPWDLP--------EWYFFSLRDRKYTVGDRTNRATRSGYWKATGKDRPVIAGedES 102 79*********************997666767**********9........8********************************986666 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 ++vg++ktLvfy+grapkg+kt+Wvmhe+rl 462886115 103 AAVGTRKTLVFYRGRAPKGRKTEWVMHEFRL 133 77*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-53	2	162	IPR003441	NAC domain
PROSITE profile	PS51005	51.933	11	162	IPR003441	NAC domain
Pfam	PF02365	1.4E-26	12	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MSSISMMEAR MPPGFRFHPR DDELVLDYLL QKLSGSARAH SGVAMVDVDL NKCEPWDLPE 60 WYFFSLRDRK YTVGDRTNRA TRSGYWKATG KDRPVIAGED ESAAVGTRKT LVFYRGRAPK 120 GRKTEWVMHE FRLTAPASQL QIPVTRQYGL KEDWVLCRVF YKSMTTTQRP PSEDKAGMPS 180 SEPHLPATPP VAPLITTYNA FDGSQTAAEQ GRESKPESVR KV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	4e-43	8	163	12	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269\|PubMed:11114891}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462886115

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by auxin.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ274479	4e-94	GQ274479.1 Eragrostis tef microsatellite CNLTs186 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002443999.1	8e-94	NAC domain-containing protein 21/22
Swissprot	Q84TE6	2e-63	NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBL	C5YIE8	2e-92	C5YIE8_SORBI; Uncharacterized protein
STRING	Sb07g005610.1	3e-93	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1012	37	138

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12977.1	1e-66	NAC family protein

Publications ? help Back to Top
Le Hénanff G, et al. Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance. J. Exp. Bot., 2013. 64(16): p. 4877-93 [PMID:24043850] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xiao D, et al. SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] Huo X,Wang C,Teng Y,Liu X Identification of miRNAs associated with dark-induced senescence in Arabidopsis. BMC Plant Biol., 2015. 15: p. 266 [PMID:26530097] Chen X, et al. Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis. Plant Physiol., 2016. 170(4): p. 2136-45 [PMID:26850273] Liu C,Wang B,Li Z,Peng Z,Zhang J TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth. Plant Physiol., 2018. 176(1): p. 742-756 [PMID:29122985]