PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462886253
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 169aa    MW: 19766.5 Da    PI: 10.8967
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462886253genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.81.4e-14453148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48
                     r+rW +eEd  l  +v+q+G++ W++++++m+  + R +k+c +rw +yl
        462886253  4 RQRWRPEEDAVLRAYVRQFGPREWHLVSQRMNvaLDRDAKSCLERWKNYL 53
                     89**********************************************97 PP
2Myb_DNA-binding36.21.4e-1159100144
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      +g+ T+eE+ l +++ +++G++ Wk+Ia++++ gRt+k +  +w
        462886253  59 KGSLTEEEQRLVIRLQAKHGNK-WKKIAAEVP-GRTAKRLGKWW 100
                      6788******************.*********.****9887666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.739157IPR017930Myb domain
SMARTSM007174.4E-11355IPR001005SANT/Myb domain
SuperFamilySSF466895.5E-22498IPR009057Homeodomain-like
CDDcd001673.70E-7653No hitNo description
Gene3DG3DSA:1.10.10.601.5E-20660IPR009057Homeodomain-like
PfamPF139213.7E-13768No hitNo description
SMARTSM007171.7E-858106IPR001005SANT/Myb domain
PROSITE profilePS5129416.98258108IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.5E-1661102IPR009057Homeodomain-like
CDDcd001678.95E-763100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MKERQRWRPE EDAVLRAYVR QFGPREWHLV SQRMNVALDR DAKSCLERWK NYLRPGIKKG  60
SLTEEEQRLV IRLQAKHGNK WKKIAAEVPG RTAKRLGKWW EAAAAERVER EYREKVAELR  120
RDAQAKEEKM AEQWAAKHAR VAKFLDQIAS SGGGHQRPRG PSWSSADIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-1671087105MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-1671087105C-Myb DNA-Binding Domain
1msf_C2e-1671087105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for normal cell differentiation. Interacts directly with asymmetric leaves 2 (AS2) to repress the knox homeobox genes. {ECO:0000269|PubMed:10102816, ECO:0000269|PubMed:12750468, ECO:0000269|PubMed:9655808}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462886253
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1264891e-133AF126489.1 Zea mays rough sheath2 protein (rs2) gene, complete cds.
GenBankAF1434471e-133AF143447.1 Zea mays rough sheath 2 (rs2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105509.13e-65protein rough sheath 2
SwissprotQ9S7B22e-66RS2_MAIZE; Protein rough sheath 2
TrEMBLM0TX415e-65M0TX41_MUSAM; Uncharacterized protein
STRINGPavir.Cb00486.1.p4e-66(Panicum virgatum)
STRINGGRMZM2G403620_P011e-64(Zea mays)
STRINGGSMUA_Achr9P03320_0018e-66(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51903654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37630.11e-61MYB family protein