PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462886298

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

ERF

Protein Properties

Length: 254aa MW: 27766.9 Da PI: 4.2743

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462886298	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	27.4	8.5e-09	8	34	29	55
AP2 29 krfslgkfgtaeeAakaaiaarkkleg 55 r++lg+f ++eeAa+a++a +++++g 462886298 8 VRVWLGTFNSPEEAARAYDAEARRIRG 34 79**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	2.38E-18	1	44	No hit	No description
PROSITE profile	PS51032	13.999	1	42	IPR001471	AP2/ERF domain
SMART	SM00380	6.4E-12	2	48	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	3.9E-17	3	43	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.18E-11	3	43	IPR016177	DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MGDPHKGVRV WLGTFNSPEE AARAYDAEAR RIRGKKAKVN FPDTLTGVQK RRAGLTVAKA 60 PKSSFEQKPT VKAALNNPIN TNGSFYPSAD YTSNKQVVQL DNMSFLPAMN PAAPIEDPIM 120 NLHSDQGSNS FSCSDLGWEN ETKTPDITSI TPDSTIAEGD ETEFVNNYSD GSLVPPVMEN 180 NTVDLTDELT DLEPYMRFLL DGGASESIDS LLNLDGSQDV VSDMDLWSFG DMPIFGIKTK 240 DWEIGKHLLG TLGQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269\|PubMed:12913152}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462886298

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012698581.1	1e-122	ethylene-responsive transcription factor 1
Refseq	XP_022685012.1	1e-122	ethylene-responsive transcription factor 1
Swissprot	Q6K7E6	1e-110	ERF1_ORYSJ; Ethylene-responsive transcription factor 1
TrEMBL	A0A1E5WBP2	1e-125	A0A1E5WBP2_9POAL; Ethylene-responsive transcription factor 1
STRING	Si017568m	1e-122	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1039	38	134

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14230.2	9e-13	related to AP2 2

Publications ? help Back to Top
Kim CY, et al. Identification of rice blast fungal elicitor-responsive genes by differential display analysis. Mol. Plant Microbe Interact., 2000. 13(4): p. 470-4 [PMID:10755311] Koo SC, et al. OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33. Biochem. Biophys. Res. Commun., 2009. 387(2): p. 365-70 [PMID:19607808] Iwamoto M,Takano M Phytochrome-regulated EBL1 contributes to ACO1 upregulation in rice. Biotechnol. Lett., 2011. 33(1): p. 173-8 [PMID:20872166] Serra TS, et al. OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors. Plant Mol. Biol., 2013. 82(4-5): p. 439-55 [PMID:23703395] Jisha V, et al. Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice. PLoS ONE, 2015. 10(6): p. e0127831 [PMID:26035591] Lourenço TF, et al. The Rice E3-Ubiquitin Ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 Modulates the Expression of ROOT MEANDER CURLING, a Gene Involved in Root Mechanosensing, through the Interaction with Two ETHYLENE-RESPONSE FACTOR Transcription Factors. Plant Physiol., 2015. 169(3): p. 2275-87 [PMID:26381316]