PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462886322
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 652aa    MW: 73418.4 Da    PI: 8.9188
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462886322genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-07594637243
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                      ++WT+   + lv+a k ++++   +W+++a+ ++ g+t  qck +
        462886322 594 DAWTEAQVLALVQALKAFPKDasqRWERVAAAVP-GKTVVQCKKK 637
                      58********************************.********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465652.75E-2075174IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1101.1E-2092198IPR001623DnaJ domain
SMARTSM002712.7E-1595170IPR001623DnaJ domain
PfamPF002261.8E-1796175IPR001623DnaJ domain
PROSITE profilePS5007618.07596178IPR001623DnaJ domain
CDDcd062577.21E-1396167IPR001623DnaJ domain
PRINTSPR006251.3E-8101119IPR001623DnaJ domain
PRINTSPR006251.3E-8119134IPR001623DnaJ domain
PRINTSPR006251.3E-8150170IPR001623DnaJ domain
PROSITE patternPS006360155174IPR018253DnaJ domain, conserved site
PROSITE profilePS500906.202461516IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.4E-5463508IPR009057Homeodomain-like
SuperFamilySSF466891.64E-7463509IPR009057Homeodomain-like
SMARTSM007179.5E-6465518IPR001005SANT/Myb domain
PfamPF002491.1E-5468508IPR001005SANT/Myb domain
CDDcd001671.19E-4468508No hitNo description
PROSITE profilePS500906.249588642IPR017877Myb-like domain
SMARTSM007176.5E-6592644IPR001005SANT/Myb domain
SuperFamilySSF466894.64E-8594646IPR009057Homeodomain-like
PfamPF002495.0E-6595637IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-4595637IPR009057Homeodomain-like
CDDcd001672.66E-5595637No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
MESKKSCLYI TYSPEITDGV PLYVSSNCLP VKASKYEPAG HSFHAAAMKL RGLGEQEDTE  60
TDDRSVSSDD KSQDFAAGSD NFSSKGKKKS GSQQQDHYAL LGLGNLRYLA TEDQIRKSYR  120
DMALKHHPDK QAALLLSETT EEAKQAKKDE IENHFKAIQE AYEVLIDPTK RRIFDSTDEF  180
DDDVPTDCAP QDFFKVFGPA FMRNGRWSVN QPIPSLGDDS TPISEVDKFY NFWYNFKSWR  240
EFPDDDEYDL EQAESREHKR WMERQNLKLQ EKAKKVEYAR VRTLVDNAYK KDPRIQRRKE  300
EEKAEKQRRK EAKYMAKKLQ EEEAARAVEE ERKRKEEEAK KAAEAALNQK KLKEKEKKLL  360
RKEKTRLRTL AAPVITENHF GLSGDDVEAA CASLDMERLK QLCDSMDGKD AAEKARLLRG  420
ALNKEVSLKE EKKSEANGVE SSTAKSNSTG NKVTQGSILN SYEKKERPWG KEEVEMLRKA  480
IQKYPKGTSR RWEVVSEFIG TGRSVEEILK ATKTVLLQKP DSTKAFDSFL EKRKPAVSIA  540
SPLSTRDETV GSSTEGAATA SSKVTAQPAS SQTASEKTAA DPVQNGATSA ADPDAWTEAQ  600
VLALVQALKA FPKDASQRWE RVAAAVPGKT VVQCKKKVAS MRENFRSKKG AE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A8e-1919229620124Zuotin
5dje_B8e-1919229620124Zuotin
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1331352RKRKEEEAKKAAEAALNQKKLK
Cis-element ? help Back to Top
SourceLink
PlantRegMap462886322
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021319127.10.0dnaJ homolog subfamily C member 2-like
RefseqXP_021319128.10.0dnaJ homolog subfamily C member 2-like
RefseqXP_021319129.10.0dnaJ homolog subfamily C member 2-like
RefseqXP_021319130.10.0dnaJ homolog subfamily C member 2-like
TrEMBLA0A1B6PK990.0A0A1B6PK99_SORBI; Uncharacterized protein
STRINGPavir.Ia04593.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81193440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain