PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462886928
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 136aa    MW: 15629.8 Da    PI: 11.1513
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462886928genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.71.3e-1384128246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g+WT+eEd  l + v+++G+++W+ I ++  + Rt+k+c++r+ +
        462886928  84 GPWTKEEDAVLREHVEKHGPKQWSDIQSKGLLQRTGKSCRLRYVN 128
                      89************************9998899**********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.07378134IPR017930Myb domain
SuperFamilySSF466893.59E-1581136IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.7E-2081136IPR009057Homeodomain-like
SMARTSM007175.1E-1082132IPR001005SANT/Myb domain
PfamPF002493.7E-1284128IPR001005SANT/Myb domain
CDDcd001677.43E-1085130No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MAKLRSNLGA EREARRLLRA RRRAGAGGLG ACRWRRGNAR VLGNWMRRRE LFEYQHGDTD  60
AALERLQEAA VEDLDESIAD RTAGPWTKEE DAVLREHVEK HGPKQWSDIQ SKGLLQRTGK  120
SCRLRYVNKL RPGLKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-13841362879MYB TRANSFORMING PROTEIN
Cis-element ? help Back to Top
SourceLink
PlantRegMap462886928
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.14e-22MYB family protein