PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462886934
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ARF
Protein Properties Length: 1188aa    MW: 131856 Da    PI: 6.1189
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462886934genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.11.4e-17132247199
                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE................EEETTEEEE-TTHHHHHHHHT--TT-E CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliy..............rkksgryvltkGWkeFvkangLkegDf 79 
                f+k+lt sd++++g +++p++ ae++       + +++  ++l+ +d++  +W++++iy              +++++r++lt+GW+ F + ++L +gD+
  462886934 132 FCKTLTASDTSTHGGFSVPRRSAERIfppldfsM-QPPA-QELQARDLHDSTWTFRHIYrdlfkfyewfsstpSGQPKRHLLTTGWSLFISGKRLLAGDS 229
                99*****************************954.4444.49***************************9999999999********************* PP

                EEEEE-SSSEE..EEEEE-S CS
         B3  80 vvFkldgrsefelvvkvfrk 99 
                v+F   ++ +++l+++++r+
  462886934 230 VLFI--RDAKQQLLLGIRRA 247
                ****..45677789999997 PP
2Auxin_resp118.74.8e-39272355183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+++s F+++YnPr+s+seFv++++k++ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sd+dpvrW+nS+Wr+++
   462886934 272 AAHAAANNSQFTIFYNPRTSPSEFVIPFAKYQKAVYsNQLSLGMRFRMMFETEESGTRRYMGTITGISDMDPVRWKNSQWRNIQ 355
                 79*********************************989*******************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.1E-38121275IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.2E-36124261IPR015300DNA-binding pseudobarrel domain
CDDcd100171.90E-14131235No hitNo description
PfamPF023627.2E-15132247IPR003340B3 DNA binding domain
PROSITE profilePS5086310.532132248IPR003340B3 DNA binding domain
SMARTSM010191.4E-11132248IPR003340B3 DNA binding domain
PfamPF065075.4E-34272355IPR010525Auxin response factor
PfamPF023095.0E-1010441137IPR033389AUX/IAA domain
PROSITE profilePS5174527.01110521136IPR000270PB1 domain
SuperFamilySSF542774.19E-810541131No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1188 aa     Download sequence    Send to blast
MAAAGMGSGG AGGEGGLVEG KGKKVNEELW YACAGPLVAL PPAGSLVVYF PQGHSEQVAA  60
SMRKDADAKI PSYPNLPSKL ICILHSVTMH ADPDTDEVYA RMTLQPVAQC DKETLLASEL  120
ALKQSRPQTE FFCKTLTASD TSTHGGFSVP RRSAERIFPP LDFSMQPPAQ ELQARDLHDS  180
TWTFRHIYRD LFKFYEWFSS TPSGQPKRHL LTTGWSLFIS GKRLLAGDSV LFIRDAKQQL  240
LLGIRRANRQ PVNLSSSVLS SDSMHIGILA AAAHAAANNS QFTIFYNPRT SPSEFVIPFA  300
KYQKAVYSNQ LSLGMRFRMM FETEESGTRR YMGTITGISD MDPVRWKNSQ WRNIQVAWDE  360
AAPSERRTRV SLWEIEPVIA PFFIYPSPLF TAKRPRQPGI LDDDASEMDN PFKRTMPWLG  420
DVIDKKDFTN QNSLVPGLSL VQWMNLQQNP SLASTVMQPD FLNSLAGKPV QTLAAADISR  480
QISFQPQFLQ QNNIQFNSSL LPPQNQQIEQ LAKVIATPNQ LGSVIVPQKV VQDCNSEQKQ  540
HTTTQPMQGG QPSINIAQPQ LQQPQVILQA QPQQPQVIVQ AQLQQQQPLA QNHTIVKGGI  600
QQIHLLQQQQ THLQQQQVAW DEAAPSERRT RVSLWEIEPA LQPLQPLNMD QQKMILELQQ  660
QMSTAQHSQV VGMQNSSTIQ YPAQQQHLIQ GFRGNDVSVA KSETVTSMGA HSLHMPGGVQ  720
PLKTDDIPPS STSPSTNSNP VYLQSIPSTS KNQSLLSVAN TPQSSIALGP TIEQEMKPHH  780
STKQTVAIPK MTDQRPATGQ DYMNNTPQVD YLDSSSSATS VCLSQADGSL QQNFPPSSFN  840
QHQLLRDTVP DSEFETPQSS IALGPTIEQE MKPHHSTKQT VAIPKMTDQR PATGQDYMNN  900
TPQVDYLDSS SSATSVCLSQ ADGSLQQNFP PSSFNQHQLL RDTVPDSEFE VADPGNNLLF  960
GANIDSQLEP LNADALLANN IENEKYMGQM PGIGISNYIS SRDSQQELSS SMISHPFGVA  1020
DMPFNSIESS MNDTPFLNTN TRASAPSHQR MRTYTKVHKR GAVGRSIDIN RYSGYDELKH  1080
DIARMFGIEG QLSDQNRFGW KLVYEDHEKD VLLVGDDPWE DFVNCVRCIR ILSPQEEMQM  1140
RLVGDFGDSF LPNQACSSSD GGHPWRITDS SCLFLGKNDL LTVLKNNH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1582537651388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMap462886934
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002445864.10.0auxin response factor 21
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLC5YIB60.0C5YIB6_SORBI; Auxin response factor
STRINGSb07g027080.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19