PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462887104
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C2H2
Protein Properties Length: 165aa    MW: 19044.8 Da    PI: 9.4198
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462887104genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.5e-055276223
               EET..TTTEEESSHHHHHHHHHH.T CS
    zf-C2H2  2 kCp..dCgksFsrksnLkrHirt.H 23
               kC+  dC+ sFs ksnL +H +  H
  462887104 52 KCHfkDCKCSFSKKSNLDKHVKAvH 76
               7*******************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355202142IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.3E-43273IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.38E-63288No hitNo description
SMARTSM003550.115176IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.8845181IPR007087Zinc finger, C2H2
PROSITE patternPS0002805376IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.0E-675104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.82982108IPR007087Zinc finger, C2H2
SMARTSM00355382108IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028084108IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MKTFTNVECL MAHKQSCHQH VQCDVCGTKQ LKKNFKRHCR MHEGSCVTER IKCHFKDCKC  60
SFSKKSNLDK HVKAVHEQHR PFVCRFSGCG KKFSYKHVRD NHEKSSAHVY IEGDFEADEQ  120
QRHSAGGRKR KRITVESLMG KRVAAPDDAP APEDGIEYLR WLLSG
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462887104
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960333.13e-94transcription factor IIIA
SwissprotQ84MZ48e-47TF3A_ARATH; Transcription factor IIIA
TrEMBLK3Z7447e-93K3Z744_SETIT; Uncharacterized protein
STRINGSi022364m1e-93(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23823882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.11e-41transcription factor IIIA