PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462887568

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

NF-YB

Protein Properties

Length: 184aa MW: 19793.5 Da PI: 4.4877

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462887568	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	80.3	2.5e-25	22	107	6	91
NF-YB 6 rflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 +Pi+ ++r+m++v+P n+ki d+ke + +cvsef + + ea + ++++ r ++gdd++ al+ lGf dyv+pl+++l++y 462887568 22 TKIPISILARLMHHVMPLNTKINMDTKEAMSQCVSEFAAVLIREARQVAREDSRVVVSGDDIISALGRLGFSDYVAPLSLFLRRYC 107 579**********************************************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.9E-24	19	111	IPR009072	Histone-fold
Pfam	PF00808	2.3E-9	23	87	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	1.04E-18	24	109	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MEGNQAHDNN MPEGTEAVEE ITKIPISILA RLMHHVMPLN TKINMDTKEA MSQCVSEFAA 60 VLIREARQVA REDSRVVVSG DDIISALGRL GFSDYVAPLS LFLRRYCVSQ GIVPRGWKAE 120 LSQQAPSSAV AAAPVEIQQQ PEPDLTLGLA LPGPSDVTEL GMNENVYKLW PGAAGSMPPA 180 GGDQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	5e-18	24	106	13	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462887568

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14056	13	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47810.1	6e-22	nuclear factor Y, subunit B5