PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462887571
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NF-YB
Protein Properties Length: 173aa    MW: 19117.7 Da    PI: 4.374
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462887571genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB79.93.4e-2522110795
      NF-YB   7 flPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                 + i+ ++rim +v+P n+ki  d+ke + +cvsef + +  ea + ++++ r  ++gdd++ +l  lGf dyv+pl+++l++yre +g
  462887571  22 KISISILTRIMYHVMPLNTKINVDTKEAMSQCVSEFAAVLIREARQVAREDSRVIVSGDDIISSLDRLGFSDYVAPLSLFLRRYRESQG 110
                5678899*******************************************************************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.106.9E-2421113IPR009072Histone-fold
SuperFamilySSF471131.31E-1925126IPR009072Histone-fold
PfamPF008081.2E-72885IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MEDSQAYDNI PEGTQAVEEI TKISISILTR IMYHVMPLNT KINVDTKEAM SQCVSEFAAV  60
LIREARQVAR EDSRVIVSGD DIISSLDRLG FSDYVAPLSL FLRRYRESQG IQQPPAVGSA  120
PVEIQQQPEL DLTLSLALPG PRDVTELELH EDVYKLWPGA AGRLMPPAGG DHT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A9e-18251071597NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Cis-element ? help Back to Top
SourceLink
PlantRegMap462887571
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3L6S2Q01e-33A0A3L6S2Q0_PANMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140561326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.11e-22nuclear factor Y, subunit B10