PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462887679
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HSF
Protein Properties Length: 154aa    MW: 17237.9 Da    PI: 8.5136
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462887679genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind23.11.9e-07835229
                  HHHHHHHHHCTGGGTTTSEESSSSSEEE CS
  HSF_DNA-bind  2 Flkklyeiledeelkeliswsengnsfv 29
                  Fl+k+y ++ed++++++isw+++g++fv
     462887679  8 FLTKTYAMVEDPSTDDTISWNDTGTAFV 35
                  9*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.7E-13466IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.0E-7435IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.58E-13466IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.8E-4835IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.4E-43966IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MAAGTPPFLT KTYAMVEDPS TDDTISWNDT GTAFVGFKKV MADRWEFAND CFRRGEKHLL  60
GGIQRRKGTG GAAAAPGIPT AIPISSPXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  120
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXX
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462887679
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6630033e-38AL663003.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0032E06, complete sequence.
GenBankAP0149603e-38AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankAY3444833e-38AY344483.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF1 mRNA, complete cds.
GenBankCP0126123e-38CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8551493e-38CR855149.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0103M18, complete sequence.
GenBankCR8551653e-38CR855165.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0139P06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015691545.11e-41PREDICTED: heat stress transcription factor B-2a-like
SwissprotQ7XRX35e-38HFB2A_ORYSJ; Heat stress transcription factor B-2a
TrEMBLC5YE302e-39C5YE30_SORBI; Uncharacterized protein
TrEMBLJ3M0I03e-39J3M0I0_ORYBR; Uncharacterized protein
STRINGOB04G29050.16e-40(Oryza brachyantha)
STRINGSb06g025710.14e-40(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.15e-21HSF family protein
Publications ? help Back to Top
  1. Nakayama A, et al.
    Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice.
    BMC Plant Biol., 2013. 13: p. 150
    [PMID:24093634]