PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462887900
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 403aa    MW: 43238 Da    PI: 9.1157
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462887900genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.15.8e-12220266354
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                ++h+e+ErrRR+riN  +++Lr ++P        K++Ka+ L +++ ++k+L
  462887900 220 KNHSEAERRRRERINAHLATLRGMVPCT-----DKMDKAALLAEVITHVKKL 266
                58*************************7.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.53E-13216272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.148217266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-13220275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-9220266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-11223272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MALLFVVLGN QGVGVAAVCL LASSCLSLRV LGLGLATFWF WRRVLGPCEC KFLGARAACL  60
VPAELLLIPR KKKRLLLKLH FLVVKETLSS GLDLHIYASR LLSVACQLAL ILGSVFLTQN  120
FLHRKTVVAR TVMPLCLADH RRRGILLNGN MSSAPLSSDS SGLYAGFGDG HCHDLQDLSQ  180
VLGASSTSPD VVSNGNAQEL DAAAAKEVGK RKGDRAESLK NHSEAERRRR ERINAHLATL  240
RGMVPCTDKM DKAALLAEVI THVKKLKTNA ARISQHCPVP ADADEVTVEL VHDASSHDGG  300
GVLVKATLSC DDGADIFADV KDALRPLRLR VVGSEVTTLG GRVRFTFLMS SCAGGDDVSE  360
GAVHQALQSV LDKANNALEF APRASLLNKR RRFSTFESSS SSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16874PRKKKRL
2209229KRKGDRAESLKNHSEAERRRR
3225230ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMap462887900
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818650.13e-92transcription factor bHLH30-like
TrEMBLA0A2S3HYZ98e-91A0A2S3HYZ9_9POAL; Uncharacterized protein
STRINGPavir.Ea00157.1.p9e-91(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110112938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-32bHLH family protein