PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462888256

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

YABBY

Protein Properties

Length: 171aa MW: 17876.6 Da PI: 7.2855

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462888256	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	85.1	2e-26	21	126	5	100
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas...qllaaeshldeslkee.........lleelkveeenlksnvekeesa 92 s +eq+Cyv+Cn C+tilav vP +slfk+vtvrCGhC++llsvnl + +a+++l+ ++ ll+el + +l + + ++ + 462888256 21 SPTEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLCGLLlppAAPPANNQLNF--GQSllsptsphgLLDELALQAPSLLMEQAASANL 118 578*******************************************998855555566666543..2222334677777777777777776666665554 PP YABBY 93 stsvssek 100 s+ ++ + 462888256 119 SSITNRSY 126 44333322 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.3E-27	22	119	IPR006780	YABBY protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MMSSSSSSSG TAFPLDHLAP SPTEQLCYVH CNCCDTILAV GVPCSSLFKT VTVRCGHCAN 60 LLSVNLCGLL LPPAAPPANN QLNFGQSLLS PTSPHGLLDE LALQAPSLLM EQAASANLSS 120 ITNRSYSSCA SNVPAAAPMP PVKLPVQREP PELPTKSAPS VNRRKDLIPF P

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to be associated with phloem cell differentiation. {ECO:0000269\|PubMed:17676337}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462888256

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB274016	1e-120	AB274016.1 Oryza sativa Japonica Group OsYABBY4 mRNA for OsYABBY4 protein, complete cds.
GenBank	AK106784	1e-120	AK106784.1 Oryza sativa Japonica Group cDNA clone:002-115-H10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020155220.1	2e-73	protein YABBY 4-like isoform X1
Swissprot	A2X7Q3	1e-62	YAB4_ORYSI; Protein YABBY 4
Swissprot	Q6H668	1e-62	YAB4_ORYSJ; Protein YABBY 4
TrEMBL	A0A3B6QIL1	4e-72	A0A3B6QIL1_WHEAT; Uncharacterized protein
TrEMBL	A0A453P643	4e-72	A0A453P643_AEGTS; Uncharacterized protein
TrEMBL	A0A453P657	2e-72	A0A453P657_AEGTS; Uncharacterized protein
STRING	Traes_6DL_59DB06B9F.1	7e-73	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1445	38	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00180.1	1e-19	YABBY family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yang C,Ma Y,Li J The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway. J. Exp. Bot., 2016. 67(18): p. 5545-5556 [PMID:27578842]