PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462888394
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family G2-like
Protein Properties Length: 246aa    MW: 27262.6 Da    PI: 8.8241
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462888394genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like97.59.6e-311871255
    G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
               pr+rWt+eLH++Fveave LGG+++AtPk+il+lm+vkg++++h+kSHLQ+YR+
  462888394 18 PRMRWTEELHRQFVEAVECLGGQDEATPKRILQLMGVKGVSISHIKSHLQMYRS 71
               8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.3921474IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-291472IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-241871IPR006447Myb domain, plants
SuperFamilySSF466891.02E-161873IPR009057Homeodomain-like
PfamPF002496.3E-91970IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MRGFERKGVR QYNRSEVPRM RWTEELHRQF VEAVECLGGQ DEATPKRILQ LMGVKGVSIS  60
HIKSHLQMYR SSSNSSTHQA SHQKLTSTTS KHVFLNREGQ CVYASHDGNA ASASDKNIYT  120
MLRNCSHASP CQLPSLKEIF SIWEQSRGRV PRHTNVLTTE KAIRPSHTFN KKPEKQKSCD  180
LTLSIGPWED ASSDADGSST ISEELATQPR GGSFGSPATG DCFAAVKQES IPALNLDLTI  240
SSSWLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-161972457Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-161972457Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A9e-171972356Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B9e-171972356Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C9e-171972356Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D9e-171972356Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-161972457Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-161972457Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-161972457Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-161972457Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-161972457Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-161972457Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462888394
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9560372e-80EU956037.1 Zea mays clone 1555999 myb-like DNA-binding domain, SHAQKYF class family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966301.11e-118uncharacterized protein LOC101769616
TrEMBLA0A1E5VP041e-119A0A1E5VP04_9POAL; Uncharacterized protein
STRINGSi007179m1e-118(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54933758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.11e-26G2-like family protein