PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462889020
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 790aa    MW: 85564.7 Da    PI: 7.0587
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462889020genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.91.1e-29230286259
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 Dg+nWrKYGqK+vk+s+++rsYYrCts+gC +kkkve+   d++vvei+Y+g Hnhe
  462889020 230 ADGFNWRKYGQKQVKSSDNSRSYYRCTSSGCLAKKKVEHFP-DGRVVEIIYRGAHNHE 286
                7****************************************.***************8 PP
2WRKY93.91.1e-29451507259
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 Dg+nWrKYGqK+vk+s+++rsYYrCts+gC +kkkve+   d++vvei+Y+g Hnhe
  462889020 451 ADGFNWRKYGQKQVKSSDNSRSYYRCTSSGCLAKKKVEHFP-DGRVVEIIYRGAHNHE 507
                7****************************************.***************8 PP
3WRKY99.91.6e-31622679259
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                +Dgy+WrKYGqK vkg+++prsYYrCt+ gCpv+k+ve++ +d + +++tYeg+Hnh+
  462889020 622 SDGYRWRKYGQKIVKGNPNPRSYYRCTHGGCPVRKHVEKAPDDDNNIVVTYEGKHNHD 679
                8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-25223288IPR003657WRKY domain
PROSITE profilePS5081122.435224288IPR003657WRKY domain
SuperFamilySSF1182904.97E-23225288IPR003657WRKY domain
SMARTSM007741.4E-31229287IPR003657WRKY domain
PfamPF031062.8E-22231286IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-25444509IPR003657WRKY domain
PROSITE profilePS5081122.435445509IPR003657WRKY domain
SuperFamilySSF1182904.97E-23446509IPR003657WRKY domain
SMARTSM007741.4E-31450508IPR003657WRKY domain
PfamPF031062.8E-22452507IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.3E-31614681IPR003657WRKY domain
SuperFamilySSF1182902.09E-27616681IPR003657WRKY domain
PROSITE profilePS5081132.856616681IPR003657WRKY domain
SMARTSM007747.1E-36621680IPR003657WRKY domain
PfamPF031061.1E-25623679IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 790 aa     Download sequence    Send to blast
MAAGDPEPEP VEEKRPSPGE EAVAAEAEET RPTPAETPGA PVEEKRPAPE AAAEADARPP  60
PEPPGKPPGF AAVLDKGVEV KAEPGAGDKL DKEMKKKGKI EAKVAKVSEV KVEATRRPAG  120
SSAEAPILAV PMVAVPCFIA PPGFPGQFVM SHQAALASVT AQAQMHLQSP TSSAYSEAPS  180
SPFYITPKAV VPLQQAPSAS EVTICSTPKA DRLSSSEPKS PHHVVVNMVA DGFNWRKYGQ  240
KQVKSSDNSR SYYRCTSSGC LAKKKVEHFP DGRVVEIIYR GAHNHEPPQK TRFAKERVPP  300
IRVPSGDETL RLVNTEIVDS HTPKHKLGQS SVTETSEHAS EQQLFCSSDC EGDAGNKSED  360
EHPSAEPLPK RSHQAALASV TAQAQMHLQS PTSSAYSEAP SSPFYITPKA VVPLQQAPSA  420
SEVTICSTPK ADRLSSSEPK SPHHVVVNMV ADGFNWRKYG QKQVKSSDNS RSYYRCTSSG  480
CLAKKKVEHF PDGRVVEIIY RGAHNHEPPQ KTRFAKERVP PIRVPSGDET LRLVNTEIVD  540
SQTPKHKLGQ SSVTETSEHA SEQQLFCSSD CEGDAGNKSE DEHPSAEPLP KRRTVEFSTP  600
NFTPVLRTVK EQKIIVQAGN MSDGYRWRKY GQKIVKGNPN PRSYYRCTHG GCPVRKHVEK  660
APDDDNNIVV TYEGKHNHDE PFRRDMSISV IPPSVITTEE PNMSPSTSVI TPSATTIEQP  720
STSTSASDKK LPTSSQKDAV IEPVKDTASE LGGEKAIESA QTLLSMSTNS DEMKNSVLKE  780
TSPAVPVQNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-256216811777Probable WRKY transcription factor 4
2lex_A2e-256216811777Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462889020
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002445412.10.0probable WRKY transcription factor 32
TrEMBLA0A0A9IQZ00.0A0A0A9IQZ0_ARUDO; Uncharacterized protein
TrEMBLC5YKD90.0C5YKD9_SORBI; Uncharacterized protein
STRINGSb07g016330.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58203455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.21e-62WRKY DNA-binding protein 4