PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462889166
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NAC
Protein Properties Length: 195aa    MW: 20592.9 Da    PI: 10.9785
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462889166genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM97.12.7e-30181691128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLp.k..kvkaeekewyfFskrdkkyatgkrknra......tksgyWkatgkdk 90 
                lppGfrF+Ptdeelvv+yL++k+ g +l++  vi+ v ++y+++Pwd+p    +++a+  e yfF+ r  ++  g+ ++ +      t+sg+Wk  gk++
  462889166  18 LPPGFRFRPTDEELVVQYLRRKAFGVPLPA-AVIPVVaNLYSLDPWDIPgIaaTTSASGGEKYFFAVRPASSGAGECARAKsvggvsTASGRWKPAGKER 116
                79****************************.7888888***********5333333355599******999987764444356888899*********** PP

        NAM  91 evlsk.....kgelvglkktLvfy..........kgrapkgektdWvmheyrl 128
                +v+ +     ++ lvg+k+ L+f           +++a  g  + Wvmheyrl
  462889166 117 PVVLSrpcggGSLLVGVKRELAFAprrgkkknsnRASAAVGLTAGWVMHEYRL 169
                ***98898877777**********997665554334555566999******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-3512179IPR003441NAC domain
PROSITE profilePS5100537.45718195IPR003441NAC domain
PfamPF023653.6E-1919169IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MAESAPVLVR HAGGVSALPP GFRFRPTDEE LVVQYLRRKA FGVPLPAAVI PVVANLYSLD  60
PWDIPGIAAT TSASGGEKYF FAVRPASSGA GECARAKSVG GVSTASGRWK PAGKERPVVL  120
SRPCGGGSLL VGVKRELAFA PRRGKKKNSN RASAAVGLTA GWVMHEYRLA APLHKNVRIE  180
PAFLLTSHHF VLCVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-201717616149NO APICAL MERISTEM PROTEIN
1ut4_B2e-201717616149NO APICAL MERISTEM PROTEIN
1ut7_A2e-201717616149NO APICAL MERISTEM PROTEIN
1ut7_B2e-201717616149NO APICAL MERISTEM PROTEIN
4dul_A2e-201717616149NAC domain-containing protein 19
4dul_B2e-201717616149NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462889166
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0865713e-42BT086571.1 Zea mays full-length cDNA clone ZM_BFc0184N14 mRNA, complete cds.
GenBankDQ2454913e-42DQ245491.1 Zea mays clone 16115 mRNA sequence.
GenBankDQ2460953e-42DQ246095.1 Zea mays clone 16151 mRNA sequence.
GenBankEU9709063e-42EU970906.1 Zea mays clone 353721 NAC domain-containing protein 68 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820406.13e-79NAC domain-containing protein 18-like isoform X1
TrEMBLA0A2S3I4947e-78A0A2S3I494_9POAL; Uncharacterized protein
STRINGSi014408m8e-77(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118183140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.27e-25NAC domain containing protein 41