PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462889249
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family G2-like
Protein Properties Length: 268aa    MW: 29007 Da    PI: 6.2408
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462889249genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.37e-28353555
    G2-like  5 rWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
               +Wt +LHerFv+av++LGG++kAtPk++l++m v+gLtl+h+kSHLQk+Rl
  462889249  3 KWTRQLHERFVRAVSELGGADKATPKSVLRAMAVPGLTLHHLKSHLQKHRL 53
               7*************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.365156IPR017930Myb domain
PfamPF002499.4E-7252IPR001005SANT/Myb domain
SuperFamilySSF466891.09E-13356IPR009057Homeodomain-like
TIGRFAMsTIGR015578.0E-21354IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.3E-26357IPR009057Homeodomain-like
PfamPF143791.5E-14117155IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MQKWTRQLHE RFVRAVSELG GADKATPKSV LRAMAVPGLT LHHLKSHLQK HRLAVSRGLD  60
ASPADNGDRS SSSETESQPD EYVEDTVTGL YLTFAGDDGD SAPKEALCDS SRSVAWMQRE  120
VQRNLQEQIE VQRHLQLRIQ AQGRYLQSVL RRAQEVLADH SLGSPEAAMA ELSELASAAA  180
STSSSLSLSP PRHRSADSCV TSSSSSKAES KAGAKRLCTS CADTRECTVE QPVSQSKRAV  240
LQSHGQQQGG AEEEADAENG SSEIDLNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-15357660Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-15357660Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A4e-15354556Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-15354556Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-15354556Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-15354556Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-15357660Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-15357660Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-15357660Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-15357660Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-15357660Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-15357660Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462889249
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0609187e-50BT060918.2 Zea mays full-length cDNA clone ZM_BFb0071B24 mRNA, complete cds.
GenBankBT0646047e-50BT064604.1 Zea mays full-length cDNA clone ZM_BFc0189E19 mRNA, complete cds.
GenBankFP0952077e-50FP095207.1 Phyllostachys edulis cDNA clone: bphyem201h10, full insert sequence.
GenBankJX4699887e-50JX469988.1 Zea mays subsp. mays clone UT3348 G2-like transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650853.18e-88myb-related protein 2
TrEMBLA0A0A9EY771e-108A0A0A9EY77_ARUDO; Uncharacterized protein
STRINGOMERI08G12790.19e-94(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112643038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.33e-43G2-like family protein