PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462889327
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family TALE
Protein Properties Length: 221aa    MW: 24706.1 Da    PI: 7.5433
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462889327genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.2e-091561882355
                SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
   Homeobox  23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 
                +yp++e++ +LA+ +gL+ +q+ +WF N+R ++
  462889327 156 PYPTEEDKVRLASMTGLDPKQINNWFINQRKRH 188
                8*****************************885 PP
2ELK33.77.9e-12108129122
        ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                ELK++Ll+KYsg+L+ L++EF+
  462889327 108 ELKEMLLKKYSGCLSRLRSEFL 129
                9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.5E-63777IPR005540KNOX1
PfamPF037907.3E-113961IPR005540KNOX1
PROSITE profilePS5121310.423108128IPR005539ELK domain
PfamPF037899.2E-9108129IPR005539ELK domain
SMARTSM011883.6E-6108129IPR005539ELK domain
PROSITE profilePS5007112.455128191IPR001356Homeobox domain
SuperFamilySSF466894.71E-20130199IPR009057Homeodomain-like
SMARTSM003894.2E-14130195IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.0E-27133193IPR009057Homeodomain-like
CDDcd000862.11E-13140192No hitNo description
PfamPF059205.2E-17148187IPR008422Homeobox KN domain
PROSITE patternPS000270166189IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MEDLYSIHPG ISRVGGAASE ASIVGVGSGP SSADLTELMK AQIASHPRYP SLLSAYIECR  60
KGQIVSMQMG CTAVRDEMMV SSEDEQCSGD TDVADMGQEH SSRLADHELK EMLLKKYSGC  120
LSRLRSEFLK KRKKGKLPKD ARLVLLDWWN THYRWPYPTE EDKVRLASMT GLDPKQINNW  180
FINQRKRHWK PSEDMRFALM EGVAGGSSGT TLYFDTGTIG P
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123132LRSEFLKKRK
2129133KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693}.
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693, ECO:0000269|PubMed:10488233}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462889327
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9661181e-143EU966118.1 Zea mays clone 291871 homeobox protein OSH1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967561.11e-100homeobox protein knotted-1-like 1
SwissprotA2Y0074e-87KNOSA_ORYSI; Homeobox protein knotted-1-like 10
SwissprotQ7GDL54e-87KNOSA_ORYSJ; Homeobox protein knotted-1-like 10
TrEMBLB9FM991e-101B9FM99_ORYSJ; Uncharacterized protein
STRINGGRMZM2G087741_P013e-97(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16983892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.23e-42KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Ito Y,Eiguchi M,Kurata N
    KNOX homeobox genes are sufficient in maintaining cultured cells in an undifferentiated state in rice.
    Genesis, 2001. 30(4): p. 231-8
    [PMID:11536429]
  2. Postma-Haarsma AD, et al.
    Developmental regulation and downstream effects of the knox class homeobox genes Oskn2 and Oskn3 from rice.
    Plant Mol. Biol., 2002. 48(4): p. 423-41
    [PMID:11908517]
  3. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  4. Kuijt SJ, et al.
    Different subcellular localization and trafficking properties of KNOX class 1 homeodomain proteins from rice.
    Plant Mol. Biol., 2004. 55(6): p. 781-96
    [PMID:15604716]
  5. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  6. Chu H, et al.
    A CLE-WOX signalling module regulates root meristem maintenance and vascular tissue development in rice.
    J. Exp. Bot., 2013. 64(17): p. 5359-69
    [PMID:24043854]
  7. Kuijt SJ, et al.
    Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors.
    Plant Physiol., 2014. 164(4): p. 1952-66
    [PMID:24532604]
  8. Coudert Y, et al.
    Identification of CROWN ROOTLESS1-regulated genes in rice reveals specific and conserved elements of postembryonic root formation.
    New Phytol., 2015. 206(1): p. 243-54
    [PMID:25442012]
  9. Xu Y, et al.
    OsARID3, an AT-rich Interaction Domain-containing protein, is required for shoot meristem development in rice.
    Plant J., 2015. 83(5): p. 806-17
    [PMID:26121094]
  10. Kir G, et al.
    RNA Interference Knockdown of BRASSINOSTEROID INSENSITIVE1 in Maize Reveals Novel Functions for Brassinosteroid Signaling in Controlling Plant Architecture.
    Plant Physiol., 2015. 169(1): p. 826-39
    [PMID:26162429]