PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462889955
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 97aa    MW: 11067.7 Da    PI: 10.1607
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462889955genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.5e-161570148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqkyl 48
                     +g+WT+ Ed ll ++v+q+G g+W+++a+           ++R++k+c++rw +yl
        462889955 15 KGPWTALEDRLLTEYVQQHGEGSWNSVAKLTDspdrsmagLRRSGKSCRLRWVNYL 70
                     79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.673174IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-211273IPR009057Homeodomain-like
SMARTSM007173.8E-131472IPR001005SANT/Myb domain
PfamPF002492.3E-151570IPR001005SANT/Myb domain
SuperFamilySSF466891.0E-201697IPR009057Homeodomain-like
CDDcd001672.40E-101770No hitNo description
Gene3DG3DSA:1.10.10.601.5E-77497IPR009057Homeodomain-like
PROSITE profilePS512947.5137597IPR017930Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MDSISSLMLQ GGWRKGPWTA LEDRLLTEYV QQHGEGSWNS VAKLTDSPDR SMAGLRRSGK  60
SCRLRWVNYL RPDLKRGKIT PDEETVILQL HAMLGNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-15159727100MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting redundantly with MYB21 and MYB24 to control stamen filament elongation in the late developed flowers. Repressed at the transcript levels by DELLA proteins. {ECO:0000269|PubMed:19325888}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462889955
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9604503e-59EU960450.1 Zea mays clone 224989 MYB305 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465878.14e-54transcription factor MYB2
SwissprotQ9SSA17e-31MYB57_ARATH; Transcription factor MYB57
TrEMBLC5WYU89e-53C5WYU8_SORBI; Uncharacterized protein
STRINGSb01g047450.12e-53(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132282433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.13e-41myb domain protein 305