PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462890000
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 180aa    MW: 19727.7 Da    PI: 8.4878
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462890000genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61.1e-1656101148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T +E++l+v++ ++lG++ W++Ia++++  Rt++++k++w+++l
        462890000  56 RGNFTDQEEKLIVHLQALLGNR-WAAIASYLP-ERTDNDIKNYWNTHL 101
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.064150IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.4E-113661IPR009057Homeodomain-like
SuperFamilySSF466897.98E-2237109IPR009057Homeodomain-like
PROSITE profilePS5129424.72251105IPR017930Myb domain
SMARTSM007174.3E-1655103IPR001005SANT/Myb domain
PfamPF002492.1E-1556101IPR001005SANT/Myb domain
CDDcd001673.67E-1258101No hitNo description
Gene3DG3DSA:1.10.10.601.2E-2062106IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MGRAPCCDKV GLKRGRWTGE APATGAPCRP TPVRLMRCSK SCRLRWTNYL RPGIKRGNFT  60
DQEEKLIVHL QALLGNRWAA IASYLPERTD NDIKNYWNTH LKKKLKKMQA GEGGAGEDGT  120
PEYSTETSKM AGAGAPPAFS MLESWLLDDG MGHGEVGLID VVPLGDPSMA HWCCETVGLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-193710540108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462890000
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519141e-112JF951914.1 Aegilops tauschii clone TaMYB31 R2R3-MYB protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015695616.15e-75PREDICTED: myb-related protein 306-like
SwissprotP813922e-55MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A0C6WCT43e-58A0A0C6WCT4_9POAL; ScMYB27 protein
TrEMBLQ8S3Y11e-57Q8S3Y1_ORYSA; Typical P-type R2R3 Myb protein (Fragment)
STRINGPavir.Ba01835.1.p1e-56(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62470.26e-56myb domain protein 96
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]