PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462890006
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NAC
Protein Properties Length: 146aa    MW: 17156.9 Da    PI: 9.8725
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462890006genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM134.47.6e-42281433118
        NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvg 101
                 GfrFhPtdeelv++yLk+kv++  l++   ++++diyk++PwdLpk ++ +ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s+ +++ +g
  462890006  28 DGFRFHPTDEELVSFYLKRKVQEMFLDI-GLMRQLDIYKYDPWDLPKLASIGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSeGTKCIG 126
                6************************999.89***************8888899***************************************956667** PP

        NAM 102 lkktLvfykgrapkgek 118
                lkk+Lvfykg+ +kg++
  462890006 127 LKKSLVFYKGELQKGSR 143
                **********9999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100542.06626146IPR003441NAC domain
SuperFamilySSF1019411.57E-4228142IPR003441NAC domain
PfamPF023652.8E-2029136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MGKEMIGKYE AIKCTRRKTD EEKSMIIDGF RFHPTDEELV SFYLKRKVQE MFLDIGLMRQ  60
LDIYKYDPWD LPKLASIGEK EWYFYCPRDR KYRNSARPNR VTGAGFWKAT GTDRPIYSSE  120
GTKCIGLKKS LVFYKGELQK GSRLIG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-42161434130Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462890006
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022734826.14e-71protein FEZ-like
SwissprotQ9ZVH03e-69FEZ_ARATH; Protein FEZ
TrEMBLA0A2P5D1833e-69A0A2P5D183_TREOI; NAC domain containing protein
TrEMBLA0A453KYM96e-71A0A453KYM9_AEGTS; Uncharacterized protein
STRINGTraes_5AL_F35B9FF8E.11e-71(Triticum aestivum)
STRINGTraes_5DL_0713E8429.21e-71(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP148451121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-71NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]