PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462890021
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ERF
Protein Properties Length: 188aa    MW: 20309.4 Da    PI: 6.282
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462890021genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63e-1851101155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                + +kGVr++   grWv+e+r+p   g ++r++lg+f tae+Aa+a++ a+++l+g
  462890021  51 PVFKGVRRRN-PGRWVCEVREP--HG-KQRIWLGTFETAEMAARAHDVAALALRG 101
                579****887.9******9996..33.5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.1E-1351101IPR001471AP2/ERF domain
SMARTSM003802.6E-2752115IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-3052111IPR001471AP2/ERF domain
SuperFamilySSF541715.62E-2152110IPR016177DNA-binding domain
PROSITE profilePS5103221.58852109IPR001471AP2/ERF domain
PRINTSPR003676.7E-85364IPR001471AP2/ERF domain
CDDcd000184.27E-2853111No hitNo description
PRINTSPR003676.7E-87591IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MNMDVGAFSS DYSSGTPSPV GCGDDGSYMT VSSAPPKRRA GRTKFKETRH PVFKGVRRRN  60
PGRWVCEVRE PHGKQRIWLG TFETAEMAAR AHDVAALALR GRGACLNFAD SPRLLRRSGI  120
TDGSAAAEGD PDQPGQTPDE QKSVNKRKRS EDEIGGDQDN GNVEDDPAVA NLDELLAAAA  180
NEKDIDKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-14501081271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462890021
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9685621e-114EU968562.1 Zea mays clone 322305 dehydration-responsive element-binding protein 1A mRNA, complete cds.
GenBankKJ7278731e-114KJ727873.1 Zea mays clone pUT5966 AP2-EREBP transcription factor (EREB16) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953437.21e-66dehydration-responsive element-binding protein 1G
SwissprotA2XWL65e-61DRE1E_ORYSI; Dehydration-responsive element-binding protein 1E
SwissprotQ8H2735e-61DRE1E_ORYSJ; Dehydration-responsive element-binding protein 1E
TrEMBLK3YVG62e-65K3YVG6_SETIT; Uncharacterized protein
STRINGSi018262m4e-66(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25480.11e-33dehydration response element B1A
Publications ? help Back to Top
  1. Chen JQ,Meng XP,Zhang Y,Xia M,Wang XP
    Over-expression of OsDREB genes lead to enhanced drought tolerance in rice.
    Biotechnol. Lett., 2008. 30(12): p. 2191-8
    [PMID:18779926]
  2. Li S, et al.
    Mutation of OsGIGANTEA Leads to Enhanced Tolerance to Polyethylene Glycol-Generated Osmotic Stress in Rice.
    Front Plant Sci, 2016. 7: p. 465
    [PMID:27148296]