PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462890118

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

SRS

Protein Properties

Length: 228aa MW: 23678.9 Da PI: 8.0161

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462890118	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	217.4	3.2e-67	7	159	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.....aeaaskrkrelkskkqsalsstklssaes 96 +sgt++CqdCGnqakkdC+h+RCRtCCksrgfdC+thvkstWvpaa+rrerqq + + s++++ ++ ++ask++r l ++q+++s+t+ ss+ + 462890118 7 GSGTTTCQDCGNQAKKDCSHNRCRTCCKSRGFDCSTHVKSTWVPAARRRERQQLAGSGSASSSPATattaaVASASKKPRLL--SSQTTTSHTT-SSH-Q 102 57999********************************************9998765544433332333234444444443..4444444333.333.2 PP DUF702 97 kkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 + +lP++v+++avf+cvrv+s+ddge+++aYq+ v+i+GhvfkG+LydqG+++ 462890118 103 D-ASFRDNLPRQVRAPAVFKCVRVTSIDDGEDDYAYQAMVTINGHVFKGFLYDQGVDD 159 3.334556*********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.7E-64	10	158	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.6E-27	12	54	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	3.7E-28	110	157	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0048364	Biological Process	root development
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MLDTGGGSGT TTCQDCGNQA KKDCSHNRCR TCCKSRGFDC STHVKSTWVP AARRRERQQL 60 AGSGSASSSP ATATTAAVAS ASKKPRLLSS QTTTSHTTSS HQDASFRDNL PRQVRAPAVF 120 KCVRVTSIDD GEDDYAYQAM VTINGHVFKG FLYDQGVDDG RHASTSNDDS TAGVPNMSEL 180 HLGGASASGP GSSGVREGGS SMLPTELYGG GGGGQHMIGG SSYVNTMN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462890118

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU966498	2e-83	EU966498.1 Zea mays clone 294888 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818814.1	1e-110	protein LATERAL ROOT PRIMORDIUM 1
Swissprot	Q94CK9	9e-59	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A3L6SLU1	1e-112	A0A3L6SLU1_PANMI; Protein LATERAL ROOT PRIMORDIUM 1
STRING	Pavir.Eb03954.1.p	1e-106	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3579	36	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	1e-51	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]