PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462890356
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NF-YB
Protein Properties Length: 80aa    MW: 9050.3 Da    PI: 5.1501
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462890356genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB148.71.2e-461781794
      NF-YB 17 mkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94
               mkk++Pan+ki+kdaket+qecvsefisfvtseasdkcq+ekrktingddllwa+atlGfe+yv+plk yl+kyre+ 
  462890356  1 MKKAVPANGKIAKDAKETLQECVSEFISFVTSEASDKCQKEKRKTINGDDLLWAMATLGFEEYVDPLKNYLQKYREVS 78
               9***************************************************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.02E-31177IPR009072Histone-fold
PfamPF008082.4E-22155IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.107.5E-42178IPR009072Histone-fold
PRINTSPR006151.1E-221937No hitNo description
PROSITE patternPS0068502238IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.1E-223856No hitNo description
PRINTSPR006151.1E-225775No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    Send to blast
MKKAVPANGK IAKDAKETLQ ECVSEFISFV TSEASDKCQK EKRKTINGDD LLWAMATLGF  60
EEYVDPLKNY LQKYREVSDG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A5e-391761893NF-YB
4awl_B5e-391761994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A5e-391761994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. May regulate the expression of photosynthetic genes, and may be involved in chloroplast and amyloplast development. {ECO:0000269|PubMed:14617083}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462890356
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0944621e-107FP094462.1 Phyllostachys edulis cDNA clone: bphyst012k19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020182576.11e-48nuclear transcription factor Y subunit B-2-like
RefseqXP_020182577.11e-48nuclear transcription factor Y subunit B-2-like
SwissprotP252092e-47NFYB_MAIZE; Nuclear transcription factor Y subunit B
SwissprotQ5QMG32e-47NFYB2_ORYSJ; Nuclear transcription factor Y subunit B-2
TrEMBLA0A287M4257e-48A0A287M425_HORVV; Uncharacterized protein
TrEMBLA0A453FVG18e-48A0A453FVG1_AEGTS; Uncharacterized protein
TrEMBLA0A453FVH38e-48A0A453FVH3_AEGTS; Uncharacterized protein
STRINGMLOC_72428.46e-48(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.17e-48nuclear factor Y, subunit B10
Publications ? help Back to Top
  1. Li XY, et al.
    Evolutionary variation of the CCAAT-binding transcription factor NF-Y.
    Nucleic Acids Res., 1992. 20(5): p. 1087-91
    [PMID:1549471]