PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462890410

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

bHLH

Protein Properties

Length: 225aa MW: 24650.4 Da PI: 6.9403

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462890410	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.8	8.1e-13	159	204	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L++l+P+ +k + +e+L AveYIk+Lq 462890410 159 SIAERERRTRISKRLKKLQDLVPNM----DKQTNTSEMLDIAVEYIKELQ 204 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.392	153	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.67E-16	156	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.72E-13	157	208	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.8E-16	158	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.1E-13	159	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.6E-10	159	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010119	Biological Process	regulation of stomatal movement
GO:0005829	Cellular Component	cytosol
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MADHHGVAAT TGMGSYSHAG TDAMTHGHRR LSSQWSFSRQ DLPQISEMGM IPDIGESMVA 60 GGCNSSSDGG AHSSSYLSRN FSMNSWDDTN SIMFSSPGKK AKVDAADDMV TSFSNIDSQF 120 SLSKSSLEMS GMDDFLQLQQ DSVACRVRAK RGCATHPRSI AERERRTRIS KRLKKLQDLV 180 PNMDKQTNTS EMLDIAVEYI KELQGQVEKL KHDQANCSCA GNQNS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462890410

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025814593.1	1e-144	transcription factor bHLH128-like
Swissprot	Q8H102	3e-51	BH128_ARATH; Transcription factor bHLH128
TrEMBL	A0A0A9DES0	1e-143	A0A0A9DES0_ARUDO; Uncharacterized protein
TrEMBL	A0A2S3HP78	1e-143	A0A2S3HP78_9POAL; Uncharacterized protein
STRING	Pavir.J01306.1.p	1e-140	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7071	37	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05805.1	6e-52	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]