PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462891102
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C2H2
Protein Properties Length: 144aa    MW: 16957.7 Da    PI: 10.3816
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462891102genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.72.2e-061739123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C+ C+k F r  nL+ H r H
  462891102 17 FVCEVCNKGFQREQNLQLHRRGH 39
               89*******************88 PP
2zf-C2H215.64.6e-0593115123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC +C+k++  +s+ k H +t+
  462891102  93 WKCDKCNKRYAVQSDWKAHSKTC 115
                58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.44E-81639No hitNo description
Gene3DG3DSA:3.30.160.601.2E-61639IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00411739IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.0941739IPR007087Zinc finger, C2H2
PfamPF121716.0E-61739IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002801939IPR007087Zinc finger, C2H2
SMARTSM003553005888IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.4E-681114IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.44E-888113No hitNo description
SMARTSM0035511093113IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MSVIALSPRT LLATNRFVCE VCNKGFQREQ NLQLHRRGHN LPWKLKQKNP KENRRKVYLC  60
PEPTCVHHDP SRALGDLTGI KKHYCRKHGE KKWKCDKCNK RYAVQSDWKA HSKTCGTREY  120
RCDCGTLFSR SVPFFLRRFD SGFC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-2389138352Zinc finger protein JACKDAW
5b3h_F5e-2389138352Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462891102
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7548651e-162AY754865.1 Zea mays INDETERMINATE-related protein 7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001241804.28e-96uncharacterized protein LOC542697
RefseqXP_008648994.19e-96uncharacterized protein LOC542697 isoform X5
RefseqXP_008649003.19e-96uncharacterized protein LOC542697 isoform X5
RefseqXP_008649023.18e-96uncharacterized protein LOC542697 isoform X7
RefseqXP_015695695.16e-96PREDICTED: protein indeterminate-domain 5, chloroplastic-like, partial
RefseqXP_020396172.19e-96uncharacterized protein LOC542697 isoform X5
SwissprotQ9ZUL32e-87IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLA0A1D6KMX02e-94A0A1D6KMX0_MAIZE; Indeterminate domain p1
TrEMBLB7ZXB42e-94B7ZXB4_MAIZE; Indeterminate domain p1
STRINGPavir.Fb02381.1.p1e-94(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.18e-90indeterminate(ID)-domain 5
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]