PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462891326
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C2H2
Protein Properties Length: 225aa    MW: 25221.1 Da    PI: 10.2336
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462891326genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.94.2e-0682104123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C+ C+k F r  nL+ H r H
  462891326  82 FVCEVCNKGFQREQNLQLHRRGH 104
                89*******************88 PP
2zf-C2H213.30.00024159181123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC +C+k++  +s+ k H + +
  462891326 159 WKCDKCSKRYAVQSDWKAHSKIC 181
                58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.1E-781104No hitNo description
Gene3DG3DSA:3.30.160.602.4E-681104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.09482104IPR007087Zinc finger, C2H2
PfamPF121711.1E-582104IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.004182104IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028084104IPR007087Zinc finger, C2H2
SMARTSM00355150124154IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.0E-4147180IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.1E-7154179No hitNo description
SMARTSM00355140159179IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MASNSSAMKP LLAPPHQQSP AAPLNGASSS AGSVQATATP PPVKKKRNLP GNSSKLLNYH  60
FADPDAEVIS LSPKTLMATN RFVCEVCNKG FQREQNLQLH RRGHNLPWKL KQKDPLQAQR  120
RRVYTCPEPT CAHHDPARAL GDLTGIKKHF CRKHGEKKWK CDKCSKRYAV QSDWKAHSKI  180
CGTREAFACI CFGHGILYIT HQHIKKCYPY HTLDLVDAQR MFSVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-14155202352Zinc finger protein JACKDAW
5b3h_F3e-14155202352Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
UniProtTranscription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462891326
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7548641e-166AY754864.1 Zea mays INDETERMINATE-related protein 10 mRNA, complete cds.
GenBankBT0418001e-166BT041800.1 Zea mays full-length cDNA clone ZM_BFb0057K19 mRNA, complete cds.
GenBankBT0542581e-166BT054258.1 Zea mays full-length cDNA clone ZM_BFb0200O05 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105281.22e-96INDETERMINATE-related protein 10
SwissprotQ8GYC11e-79IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
SwissprotQ8RWX71e-79IDD6_ARATH; Protein indeterminate-domain 6, chloroplastic
TrEMBLA0A0A9DGU71e-102A0A0A9DGU7_ARUDO; Uncharacterized protein
STRINGPavir.Gb01057.1.p1e-94(Panicum virgatum)
STRINGGRMZM2G090595_P014e-96(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14580.25e-82C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Bustillo-Avendaño E, et al.
    Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis.
    Plant Physiol., 2018. 176(2): p. 1709-1727
    [PMID:29233938]