PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462891488

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

bHLH

Protein Properties

Length: 237aa MW: 24043.8 Da PI: 8.8815

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462891488	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28	3.8e-09	48	86	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq 462891488 48 RRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 86 ****************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.57	36	85	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.9E-8	42	91	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.49E-13	42	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.9E-6	48	86	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.43E-10	48	90	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.0E-13	49	95	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MPAQSFGGGA AAGGGLGPAG EGRRHRGSSA CGRGGDKPRT LTASPNLRRE RIAERMKALQ 60 ELVPNANKTD KASMLDEIID YVKFLQLQVK VLSMSRLGGA SAVAPLVANM SSEGNGNGNG 120 TSNNGNGNTT NSNSNSENGG SSLRLTEQQV AKLMEEDMGS AMQYLQGKGL CLMPISLASA 180 ISSATSSSLL SRSSIHPMGG AGDTLHDGGS PASPPLVNGV GCDDSRTIKD AAAGGKQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462891488

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002452977.1	1e-87	transcription factor bHLH82 isoform X1
Refseq	XP_021315043.1	1e-87	transcription factor bHLH82 isoform X2
Swissprot	Q9LSQ3	1e-60	BH082_ARATH; Transcription factor bHLH82
Swissprot	Q9ZUG9	5e-60	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A0D9YZM2	5e-90	A0A0D9YZM2_9ORYZ; Uncharacterized protein
STRING	OGLUM02G37030.1	9e-91	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1419	37	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	2e-47	LJRHL1-like 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Tam TH,Catarino B,Dolan L Conserved regulatory mechanism controls the development of cells with rooting functions in land plants. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(29): p. E3959-68 [PMID:26150509] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]