PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462891806
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 301aa    MW: 32827.6 Da    PI: 7.5965
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462891806genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.33.5e-13556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     ++rWT+eE+  l+ +v+++G+g W+tI r          R+  ++k++w+++
        462891806  5 KQRWTAEEEAALKAGVAKHGPGKWRTILRDPEfsallRLRSNVDLKDKWRNL 56
                     79***********************************99***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.946161IPR017930Myb domain
SuperFamilySSF466893.09E-15259IPR009057Homeodomain-like
SMARTSM007171.5E-7459IPR001005SANT/Myb domain
PfamPF002498.4E-9556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-13556IPR009057Homeodomain-like
CDDcd116606.87E-19656No hitNo description
SuperFamilySSF467859.25E-16120193IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.0E-16121191IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005262.7E-11122185IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150424.341122190IPR005818Linker histone H1/H5, domain H15
PfamPF005384.9E-10127183IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0033613Molecular Functionactivating transcription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0070491Molecular Functionrepressing transcription factor binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MGAPKQRWTA EEEAALKAGV AKHGPGKWRT ILRDPEFSAL LRLRSNVDLK DKWRNLSVTA  60
GGYGSREKAR LALKKGRRVP KVTAAPMDVD EVMDNAHNAV FDAQPLAMVV EPLQLEDSPD  120
KSVARLDDLI LEAIKTIKEA SGSNKAAIAA YIEEQYWPPA DFQRLLSTKL KALVSTGKLI  180
KVNQKYRIAP TSPSIGGKST KMYSAEEMNG HDNVKQLTKP QVDAELDKMK CMTKEEAAAF  240
AARAVAEAEI AIAEAEEAAR VAEAAETDAE AAKAFLEAVT ATIKNRNVAT TVEQTIILFL  300
E
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16978RLALKKGRRV
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00607ChIP-seqTransfer from AT1G49950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462891806
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818200.11e-149single myb histone 1
SwissprotB4FT401e-132SMH2_MAIZE; Single myb histone 2
TrEMBLA0A3L6SQP01e-155A0A3L6SQP0_PANMI; Single myb histone 1-like
STRINGPavir.Ea02064.1.p1e-148(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132438110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.31e-73telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]