PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462892010
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 272aa    MW: 29983.8 Da    PI: 9.7752
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462892010genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.52.4e-11555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     ++rWT eE+  l  +v+++G g+W+tI +          R+  ++k++w++
        462892010  5 KQRWTSEEEAALRAGVARHGVGNWRTILKDPEfsstlCYRSNVDLKDKWRN 55
                     79****************************999999978**********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.572161IPR017930Myb domain
SuperFamilySSF466897.9E-16259IPR009057Homeodomain-like
SMARTSM007173.3E-7459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-13556IPR009057Homeodomain-like
PfamPF002493.4E-8556IPR001005SANT/Myb domain
CDDcd116608.29E-20657No hitNo description
SuperFamilySSF467853.92E-14120183IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.105.0E-16120183IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005262.1E-9120184IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150418.241122188IPR005818Linker histone H1/H5, domain H15
PfamPF005383.4E-10127181IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MGVPKQRWTS EEEAALRAGV ARHGVGNWRT ILKDPEFSST LCYRSNVDLK DKWRNMNVVV  60
TASSSREKGR TGVKKTRPAP KNNDQSMTLS TVTSDVDDEI VDAKPIASVS SEAWNSSNPK  120
KSNSRLDNVI LEAIKNLKEP TGSHRTTIAN YIEEQYWPPS DFDHLLSAKL KDLTTSGKLI  180
KEAAAAAARA VAEAEAIMAE AEAAAREAEA AEADAQAAQA FAEAALLTLK NRNAAKLTIP  240
RKYAIHIRQL FYHKQKDKPK YDHLNNIKMG QA
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462892010
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0957611e-173FP095761.1 Phyllostachys edulis cDNA clone: bphyem123a22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982335.11e-110single myb histone 6 isoform X1
SwissprotC0HIA31e-104SMH6_MAIZE; Single myb histone 6
TrEMBLA0A1E5VMK11e-111A0A1E5VMK1_9POAL; Single myb histone 6
STRINGSi036471m1e-109(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132438110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.31e-61telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]