PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462892139
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 215aa    MW: 22936.8 Da    PI: 7.0166
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462892139genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH474.6e-1574120455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                ++  +ErrRR+r+N+ +  Lr+++P+      +K++Ka+i++ A+eYI +Lq
  462892139  74 SNTVMERRRRRRLNDTLYALRSVVPNI-----TKMDKASIVKDAIEYILQLQ 120
                67899*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.02570119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-1274120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-1875144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-1576125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-1676135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.29E-986124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MDLETGDRFA CFWDCFDAQG LQSLYIDDGD SAVSGGQHHD GYSSAPDAAG SNYSSSAAEA  60
TGTATAASKP GDNSNTVMER RRRRRLNDTL YALRSVVPNI TKMDKASIVK DAIEYILQLQ  120
QLERRLLAEI SLLESAASAH RLLVSTPPSM ADDCAVRVSG AGDKVLVVSV ACRHRRDAVA  180
KVCRALEGLR LRVLAANVTA AAGTVTHTAL VQFGP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17885ERRRRRRL
27984RRRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMap462892139
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002452037.11e-78transcription factor bHLH35 isoform X1
TrEMBLC5Y1313e-77C5Y131_SORBI; Uncharacterized protein
STRINGSb04g017390.15e-78(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29930.29e-14bHLH family protein