PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462892241
Common Namerht1-2
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family GRAS
Protein Properties Length: 434aa    MW: 47024.1 Da    PI: 5.3035
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462892241genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS465.53e-142534301374
       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl...fsevsPilkfshlt 97 
                lv++Ll+cAeav+++++++a+al++++  las++g +m+++aayf eALa+r++r        ++p ++s  +  ++++a+ l   f+e +P+lkf+h+t
  462892241  53 LVHALLACAEAVQQENFSAAEALVKQIPMLASSQGGAMRKVAAYFGEALARRVYR--------FRPAPDS--SLLDAAFADLLhahFYESCPYLKFAHFT 142
                689****************************************************........4444443..34444444433445************** PP

       GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                aNqaIlea++g++rvH++Df+i+qG+QWpaLlqaLa Rp+gpps+R+Tgvg+p+++++++l+++g++La+fA++++v+f+++ lva +l+dle+ +L+ +
  462892241 143 ANQAILEAFAGCRRVHVVDFGIKQGMQWPALLQALALRPGGPPSFRLTGVGPPQPDETDALQQVGWKLAQFAHTIRVDFQYRGLVAATLADLEPFMLQPE 242
                *************************************************************************************************554 PP

       GRAS 198 p......gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak........lpres..ee 281
                        E++aVn+v+++hrll+++++le+    vL +v+ ++Pk+v+vveqea+hns+sFl+rf+++l+yys++fdsle +         +  +   +
  462892241 243 GeendeePEVIAVNSVFEMHRLLAQPGALEK----VLGTVRAVRPKIVTVVEQEANHNSGSFLDRFTQSLHYYSTMFDSLEGGgsgqsdasPG--AaaGT 336
                44456679***********************....*********************************************8885666665333..14699 PP

       GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                ++++++++lgr+i+nvvacegaer+erhetl +Wr+rl++aGF+pv+l+++a+kqa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++SaWr
  462892241 337 DQVMSEVYLGRQICNVVACEGAERTERHETLVQWRNRLGRAGFEPVHLGSNAYKQASTLLALFAgGDGYRVEEKDGCLTLGWHTRPLIATSAWR 430
                *********************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.62427409IPR005202Transcription factor GRAS
PfamPF035141.1E-13953430IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006808Biological Processregulation of nitrogen utilization
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0010233Biological Processphloem transport
GO:0042538Biological Processhyperosmotic salinity response
GO:0090378Biological Processseed trichome elongation
GO:2000033Biological Processregulation of seed dormancy process
GO:2000273Biological Processpositive regulation of receptor activity
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MKREYQDAGG SAAGGSDLGS SKDKMMVAPA GEQDEEVDEL LAALGYKEAG IRLVHALLAC  60
AEAVQQENFS AAEALVKQIP MLASSQGGAM RKVAAYFGEA LARRVYRFRP APDSSLLDAA  120
FADLLHAHFY ESCPYLKFAH FTANQAILEA FAGCRRVHVV DFGIKQGMQW PALLQALALR  180
PGGPPSFRLT GVGPPQPDET DALQQVGWKL AQFAHTIRVD FQYRGLVAAT LADLEPFMLQ  240
PEGEENDEEP EVIAVNSVFE MHRLLAQPGA LEKVLGTVRA VRPKIVTVVE QEANHNSGSF  300
LDRFTQSLHY YSTMFDSLEG GGSGQSDASP GAAAGTDQVM SEVYLGRQIC NVVACEGAER  360
TERHETLVQW RNRLGRAGFE PVHLGSNAYK QASTLLALFA GGDGYRVEEK DGCLTLGWHT  420
RPLIATSAWR LAAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-646042926378Protein SCARECROW
5b3h_A9e-656042925377Protein SCARECROW
5b3h_D9e-656042925377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462892241
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN7992730.0JN799273.1 Eragrostis tef bio-material 494365 reduced height-2 (rht1-2) gene, complete cds.
GenBankJN7992740.0JN799274.1 Eragrostis tef bio-material 494324 reduced height-2 (rht1-2) gene, complete cds.
GenBankJN7992750.0JN799275.1 Eragrostis tef bio-material 494487 reduced height-2 (rht1-2) gene, complete cds.
GenBankJN7992760.0JN799276.1 Eragrostis tef bio-material 524435 reduced height-2 (rht1-2) gene, complete cds.
GenBankJN7992770.0JN799277.1 Eragrostis tef bio-material 358595 reduced height-2 (rht1-2) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795582.10.0DELLA protein DWARF8
SwissprotQ9ST480.0DWRF8_MAIZE; DELLA protein DWARF8
TrEMBLH9A2920.0H9A292_ERATE; Reduced height-2
STRINGPavir.Ib04357.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99838138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein
Publications ? help Back to Top
  1. Tenaillon MI, et al.
    Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.).
    Proc. Natl. Acad. Sci. U.S.A., 2001. 98(16): p. 9161-6
    [PMID:11470895]
  2. Smith SM,Yuan Y,Doust AN,Bennetzen JL
    Haplotype Analysis and Linkage Disequilibrium at Five Loci in Eragrostis tef.
    G3 (Bethesda), 2012. 2(3): p. 407-19
    [PMID:22413094]