PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462893065

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

LBD

Protein Properties

Length: 235aa MW: 23642.5 Da PI: 8.2879

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462893065	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	128	4.3e-40	40	124	1	85
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +CaaCk+lrrkC++dCv+apyfp ++p+kf vh++FGasnv+k+l++l++++reda++sl+yeA++r+rdPvyG+vgvi+ l+ 462893065 40 PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKILNELHPSQREDAVNSLAYEANMRLRDPVYGCVGVISLLRI 124 7*******************************************************************************98865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.123	39	140	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.1E-40	40	123	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MATSSSSSLP ATPGSVVTMA SSPTASSISG GSIGGGAGSP CAACKFLRRK CQPDCVFAPY 60 FPPDNPQKFV HVHRVFGASN VTKILNELHP SQREDAVNSL AYEANMRLRD PVYGCVGVIS 120 LLRITIPGRS RSYVAAAEAA AVAAVGSNGG GQAPMAGFVG NPVVPNCSQN FVNVGHSTAA 180 AAIGGAGFMQ HDAYSFGYSS GLASEHGGLG SLGNGPFMKC AAGTAGGDDR STVAQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-48	36	150	7	121	LOB family transfactor Ramosa2.1
5ly0_B	5e-48	36	150	7	121	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes the switch from proliferation to differentiation in the embryo sac. Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation. Interacts directly with RS2 (rough sheath 2) to repress some knox homeobox genes. {ECO:0000269\|PubMed:17209126}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462893065

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC134933	1e-102	AC134933.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0579A05, complete sequence.
GenBank	AC137617	1e-102	AC137617.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0084P24, complete sequence.
GenBank	AP014961	1e-102	AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004962077.1	2e-82	LOB domain-containing protein 6
Refseq	XP_004962078.1	2e-82	LOB domain-containing protein 6
Refseq	XP_004962079.1	2e-82	LOB domain-containing protein 6
Refseq	XP_012700131.1	2e-82	LOB domain-containing protein 6
Swissprot	Q32SG3	8e-74	LBD6_MAIZE; LOB domain-containing protein 6
TrEMBL	K3ZC40	5e-81	K3ZC40_SETIT; Uncharacterized protein
STRING	Si024114m	9e-82	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2267	38	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65620.4	2e-48	LBD family protein