PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462893124
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 239aa    MW: 24983.6 Da    PI: 8.9417
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462893124genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.93.1e-31100158259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +v+++tYeg+Hnh+
  462893124 100 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDRTVLITTYEGNHNHP 158
                7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.1E-3484160IPR003657WRKY domain
SuperFamilySSF1182902.22E-2892160IPR003657WRKY domain
PROSITE profilePS5081129.97694160IPR003657WRKY domain
SMARTSM007749.7E-3799159IPR003657WRKY domain
PfamPF031062.6E-27101158IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MAVDVDPRGS DCSPSSSKLV ADTAGSTPMD YCPGTGNGGM LPLPTFDHHR RRSPEEAQGW  60
LPNKVPKFLP AKGPEPVPEA ATMRKARVSV RARSEAPMIS DGCQWRKYGQ KMAKGNPCPR  120
AYYRCTMAAG CPVRKQVQRC AEDRTVLITT YEGNHNHPLP PAAMAMASTT AAAASMLLSG  180
SMPSADGSLM AGSNFLARAV LPCSSSVATI SASAPFPTVT LDLTQTAPAA ASMISSAVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-2490160877Probable WRKY transcription factor 4
2lex_A5e-2490160877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00428DAPTransfer from AT4G04450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462893124
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1209861e-130AC120986.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1781_H11, complete sequence.
GenBankAP0149611e-130AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807048.11e-112WRKY transcription factor 42-like isoform X1
RefseqXP_025807049.11e-112probable WRKY transcription factor 31 isoform X2
RefseqXP_025807050.11e-112probable WRKY transcription factor 31 isoform X2
SwissprotQ9XEC32e-90WRK42_ARATH; WRKY transcription factor 42
TrEMBLA0A1E5W9Z01e-118A0A1E5W9Z0_9POAL; WRKY transcription factor 42
STRINGPavir.Ca00949.1.p1e-114(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52653656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.16e-73WRKY family protein