PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462893163

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

MIKC_MADS

Protein Properties

Length: 208aa MW: 23831.2 Da PI: 8.7143

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462893163	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	85.1	4.2e-27	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien + rqvtfskRr+g++KKA+EL vLCda+v v++fsstg+ly++ss 462893163 9 KKIENMTSRQVTFSKRRTGLFKKAKELAVLCDAQVGVLVFSSTGRLYDFSS 59 68***********************************************96 PP
2	K-box	57.3	6.9e-20	59	124	34	99
K-box 34 eqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + R+llG++L+ ++++++++Le+qLe sl +iR kK+e+++++i+el kke + e+n++Lr+k++ 462893163 59 STRRLLGQNLSGMDFEDIKSLENQLEMSLHNIRVKKDEFMINEIQELNKKETLMIEQNEELRHKFN 124 57*************************************************************986 PP
3	K-box	14.9	1.1e-06	106	136	67	97
K-box 67 skKnellleqieelqkkekelqeenkaLrkk 97 +kK+ l++eq eel++k ++++een +Lrkk 462893163 106 NKKETLMIEQNEELRHKFNAIHEENINLRKK 136 59***************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	3.1E-37	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	29.156	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	3.63E-33	3	60	No hit	No description
PRINTS	PR00404	1.1E-25	3	23	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.16E-25	3	61	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.7E-25	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-25	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-25	38	59	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS51297	10.067	38	129	IPR002487	Transcription factor, K-box
Pfam	PF01486	8.0E-18	59	123	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MVRGKTVMKK IENMTSRQVT FSKRRTGLFK KAKELAVLCD AQVGVLVFSS TGRLYDFSST 60 RRLLGQNLSG MDFEDIKSLE NQLEMSLHNI RVKKDEFMIN EIQELNKKET LMIEQNEELR 120 HKFNAIHEEN INLRKKGERS AQKSFATEYS ITSPAEDDDD HQVHLELSQP QHAAKGKPET 180 PTLSITNAIL VDNCVAPLVH DKRFRLTS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of flowering time in long-day photoperiod. Participates in the repression of FT expression and floral transition, by interacting closely with the FLC-SVP pathways (PubMed:24876250). Functions in the satellite meristemoid lineage of stomatal development (PubMed:17704216). {ECO:0000269\|PubMed:17704216, ECO:0000269\|PubMed:24876250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462893163

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the micro RNA miR824. {ECO:0000269\|PubMed:18579782}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020165070.1	4e-62	MADS-box transcription factor 23-like
Swissprot	A2RVQ5	1e-48	AGL16_ARATH; Agamous-like MADS-box protein AGL16
TrEMBL	A0A1E5VGQ1	1e-62	A0A1E5VGQ1_9POAL; MADS-box transcription factor 27
STRING	OPUNC06G13170.1	4e-62	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP614	35	130

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57230.2	3e-51	AGAMOUS-like 16

Publications ? help Back to Top
Yang K,Jiang M,Le J A new loss-of-function allele 28y reveals a role of ARGONAUTE1 in limiting asymmetric division of stomatal lineage ground cell. J Integr Plant Biol, 2014. 56(6): p. 539-49 [PMID:24386951]