PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462893379
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 99aa    MW: 10890.2 Da    PI: 7.4147
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462893379genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY33.21e-107899122
               ---SS-EEEEEEE--TT-SS-E CS
       WRKY  1 ldDgynWrKYGqKevkgsefpr 22
               ldDg++WrKYG+K vk+s++pr
  462893379 78 LDDGFKWRKYGKKAVKNSPNPR 99
               59*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.6E-116699IPR003657WRKY domain
SuperFamilySSF1182907.45E-97099IPR003657WRKY domain
PROSITE profilePS5081113.5747399IPR003657WRKY domain
PfamPF031062.5E-67999IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
MADYAPSFPG GATVDAAFCA ELEDHRLFDF EYSPASIFAG AGGGDDHNEK KMKCGGDDKR  60
APMNGRIGFR TRSEVEILDD GFKWRKYGKK AVKNSPNPR
Cis-element ? help Back to Top
SourceLink
PlantRegMap462893379
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002440727.17e-35probable WRKY transcription factor 50
TrEMBLA0A139Z8857e-38A0A139Z885_BAMEM; Transcription factor WRKY1
STRINGSb09g005700.13e-34(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.11e-17WRKY DNA-binding protein 50