PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462893394
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 193aa    MW: 21057.3 Da    PI: 7.4546
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462893394genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.51.4e-28102161159
                ---SS-EEEEEEE--TT-SS-.EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefp.rsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDg++WrKYG+K vk+s++p r+YYrC+s+gC vkk+ver+++dp++v++tY g Hnh 
  462893394 102 LDDGFKWRKYGKKAVKNSPNPsRNYYRCSSEGCGVKKRVERDRDDPRYVITTYDGVHNHA 161
                59******************889************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-3090163IPR003657WRKY domain
SuperFamilySSF1182908.89E-2694163IPR003657WRKY domain
PROSITE profilePS5081129.35697163IPR003657WRKY domain
SMARTSM007741.4E-32102162IPR003657WRKY domain
PfamPF031061.9E-22103160IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MAASLGLNPE AFFNPCSSFS SSPFMADYAP SFPGGATVDA AFCAELEDHR LFDFEYSPAS  60
IFAGAGGGDD HNEKKMKCGG DDKRAPMNGR IGFRTRSEVE ILDDGFKWRK YGKKAVKNSP  120
NPSRNYYRCS SEGCGVKKRV ERDRDDPRYV ITTYDGVHNH ASPAAVIQYG GFYSPPHSGS  180
PPATSYSSGS FLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-2688164378Probable WRKY transcription factor 4
2lex_A3e-2688164378Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462893394
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9600547e-86EU960054.1 Zea mays clone 221474 WRKY67 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002440727.16e-86probable WRKY transcription factor 50
TrEMBLA0A139Z8852e-86A0A139Z885_BAMEM; Transcription factor WRKY1
STRINGSb09g005700.12e-85(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.15e-40WRKY DNA-binding protein 50