PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462893644

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

MYB

Protein Properties

Length: 224aa MW: 25268.5 Da PI: 9.1352

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462893644	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.3	6.3e-17	96	140	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +WT Ed +l v+++G ++Wk I ++++ gR +kqc++rw++yl 462893644 96 SWTRVEDNILRSMVERYGEHNWKMIEQHLP-GRIGKQCRDRWNNYL 140 7***************************.************7 PP
2	Myb_DNA-binding	61.1	2.3e-19	150	190	4	45
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT++Ed+ l++a++++Gg++W++Iar+++ gR+++ +k++w+ 462893644 150 WTEDEDKMLIEAHRRYGGNRWSKIARHLP-GRSENAIKNHWN 190 ***************************.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.124	89	140	IPR017930	Myb domain
SMART	SM00717	1.6E-14	93	142	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.95E-29	95	189	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.1E-21	95	143	IPR009057	Homeodomain-like
CDD	cd00167	5.38E-15	96	140	No hit	No description
Pfam	PF00249	2.1E-15	96	140	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	23.93	141	197	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.7E-21	144	194	IPR009057	Homeodomain-like
SMART	SM00717	6.0E-17	146	195	IPR001005	SANT/Myb domain
CDD	cd00167	2.92E-17	150	193	No hit	No description
Pfam	PF00249	9.4E-17	150	190	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MAMEYLGSSG HGVTHFQNSM APVSVQASED QLTSVPVDAS SLVPRIGMTP TEFEMPDGAL 60 GVTGFDVVGG VPGEAMIAWQ PQNGSYGKPP APLETSWTRV EDNILRSMVE RYGEHNWKMI 120 EQHLPGRIGK QCRDRWNNYL RPGIKKNDFW TEDEDKMLIE AHRRYGGNRW SKIARHLPGR 180 SENAIKNHWN ATLRSLKTKR RPNNNMRANT QSTCAACAWL TTYL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	9e-34	97	194	7	102	MYB PROTO-ONCOGENE PROTEIN
1h88_C	1e-33	90	194	54	156	MYB PROTO-ONCOGENE PROTEIN
1h89_C	1e-33	90	194	54	156	MYB PROTO-ONCOGENE PROTEIN
1mse_C	8e-34	97	194	7	102	C-Myb DNA-Binding Domain
1msf_C	8e-34	97	194	7	102	C-Myb DNA-Binding Domain
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462893644

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004972257.1	8e-72	transcription factor MYB80
TrEMBL	A0A3L6SKL5	2e-71	A0A3L6SKL5_PANMI; Uncharacterized protein
STRING	Si004755m	3e-71	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1882	33	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18770.1	6e-37	myb domain protein 98