PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462894131
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NF-YB
Protein Properties Length: 76aa    MW: 8525.59 Da    PI: 5.1105
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462894131genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB58.41.8e-182415695
      NF-YB 56 rekrktingddllwalatlGfedyveplkvylkkyreleg 95
               +ekrktingddl+w+l+tlGfedyveplk+ylk yre ++
  462894131  2 KEKRKTINGDDLIWSLGTLGFEDYVEPLKLYLKLYREGDT 41
               8***********************************9665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.8E-15254IPR009072Histone-fold
SuperFamilySSF471131.38E-12255IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 76 aa     Download sequence    Send to blast
MKEKRKTING DDLIWSLGTL GFEDYVEPLK LYLKLYREGD TKGSKTSDQT GKKEILLNGE  60
PGSSLRYGID QGTAEQ
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. May regulate the expression of photosynthetic genes, and may be involved in chloroplast and amyloplast development. {ECO:0000269|PubMed:14617083}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462894131
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0787422e-44KM078742.1 Triticum aestivum CCAAT-binding transcription factor A (NFYB-D11) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805143.15e-34nuclear transcription factor Y subunit B-4-like
RefseqXP_025805144.15e-34nuclear transcription factor Y subunit B-4-like
SwissprotQ65XK13e-30NFYB4_ORYSJ; Nuclear transcription factor Y subunit B-4
TrEMBLA0A0A9KDX53e-33A0A0A9KDX5_ARUDO; Uncharacterized protein
TrEMBLA0A0A9PIF89e-33A0A0A9PIF8_ARUDO; Uncharacterized protein
TrEMBLA0A2T7EA313e-32A0A2T7EA31_9POAL; Uncharacterized protein
TrEMBLA0A2T8KII43e-32A0A2T8KII4_9POAL; Uncharacterized protein
TrEMBLA0A2T8KIK14e-32A0A2T8KIK1_9POAL; Uncharacterized protein
TrEMBLK3ZDG11e-32K3ZDG1_SETIT; Uncharacterized protein
STRINGSb09g029140.15e-34(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2563055
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38880.72e-21nuclear factor Y, subunit B1
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]