PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462894244

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

LSD

Protein Properties

Length: 254aa MW: 26846 Da PI: 8.9199

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462894244	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	38	2.7e-12	86	110	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gCrt+L YP GApsV+Ca+C+++ 462894244 86 CRGCRTVLLYPQGAPSVCCAVCQAI 110 9**********************97 PP
2	zf-LSD1	41.7	1.9e-13	125	149	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+r+A VRC++C+tV 462894244 125 CGGCRTLLMYTRNADTVRCSCCHTV 149 ************************9 PP
3	zf-LSD1	47.4	3.2e-15	163	186	1	24
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg+C+t+L+YP+GApsV+Ca+C+ 462894244 163 CGQCGTTLMYPYGAPSVKCAICNY 186 **********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	1.8E-11	83	113	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.7E-10	86	110	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	3.3E-15	122	152	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	4.5E-11	125	149	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	2.4E-10	160	188	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	4.6E-14	163	187	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
LCALKSLKRA APPRRRNPIP NQLLLASPET RETEKSTPRS LDPSATLARR LRLPHRVDLF 60 PSEPPEPETG GLSRPTSAGM QSQIVCRGCR TVLLYPQGAP SVCCAVCQAI TTVPPPGLEM 120 AQLICGGCRT LLMYTRNADT VRCSCCHTVN LVRPVNNVAH VNCGQCGTTL MYPYGAPSVK 180 CAICNYITTT GINTVAASSS ATPASNGSSY SVSSTSAPKP QPPNVTVVVE NPMTVDEKGK 240 LVSNVVVGVT TGRN

Functional Description ? help Back to Top
Source	Description
UniProt	Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462894244

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004982348.1	1e-103	protein LOL3
Swissprot	Q6ASS2	1e-92	LOL3_ORYSJ; Protein LOL3
TrEMBL	K4AE78	1e-105	K4AE78_SETIT; Uncharacterized protein
STRING	Si037185m	1e-106	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1347	38	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.1	7e-55	lsd one like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]