PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462894481
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 238aa    MW: 26374.3 Da    PI: 10.3993
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462894481genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding315.8e-101361592347
                      -HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  23 tWktIartmgkgRtlkqcksrwqky 47 
                      +W++Ia++++ gRt++++k++w+++
        462894481 136 RWSKIAARLP-GRTDNEIKNHWNTH 159
                      6*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.5E-8538IPR009057Homeodomain-like
SuperFamilySSF466891.36E-5838IPR009057Homeodomain-like
PROSITE profilePS500906.8189160IPR017877Myb-like domain
SMARTSM007179.1E-1113162IPR001005SANT/Myb domain
SuperFamilySSF466895.6E-9135169IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-12135164IPR009057Homeodomain-like
PfamPF002491.2E-7136159IPR001005SANT/Myb domain
CDDcd001673.27E-7137160No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MGRQPCCDKV GVKKGPWTAE EDQKLVGFLL THGHCCWRIG PKARRAAAVR EELPAAVDQL  60
PAPRPEAGPP LRRGGAARHR PARAARQQVR APRRAASRVP FRSPCSHALS VSQFLIAVDR  120
SSVFFLRRRA CVRACRWSKI AARLPGRTDN EIKNHWNTHI RKKLLRMGID PVTHLPVHQA  180
PAPPPATEWP EPMYLFGMDG IMDAGWDGLF SGADGGMSLD PFEPYPDAGG FDQGDDWI
Cis-element ? help Back to Top
SourceLink
PlantRegMap462894481
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1074831e-108AK107483.1 Oryza sativa Japonica Group cDNA clone:002-129-C06, full insert sequence.
GenBankFJ9402171e-108FJ940217.1 Oryza sativa Japonica Group clone KCS132B07 Myb related transcription factor mRNA, complete cds.
GenBankJX2359281e-108JX235928.1 Oryza sativa Japonica Group Myb transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965175.16e-49protein ODORANT1
TrEMBLK3XYK91e-47K3XYK9_SETIT; Uncharacterized protein
STRINGSi007017m2e-48(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22680.18e-21myb domain protein 85