PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462894627

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

MIKC_MADS

Protein Properties

Length: 91aa MW: 10440 Da PI: 5.9057

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462894627	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	50	3.9e-16	1	31	21	51
HHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 21 lKKAeELSvLCdaevaviifsstgklyeyss 51 +KKA+ELSvLCdaev +i+fs++g+ly ++s 462894627 1 MKKASELSVLCDAEVGLIVFSPRGRLYQFAS 31 8****************************86 PP
2	K-box	15.2	8.8e-07	63	89	71	97
K-box 71 ellleqieelqkkekelqeenkaLrkk 97 + l++qi+el++ke++l +en+ Lr + 462894627 63 KKLMDQISELREKERNLMKENEVLRDQ 89 6799*******************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.1E-4	1	32	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	6.67E-17	1	65	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	15.657	1	33	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.6E-13	1	29	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 91 aa Download sequence Send to blast
MKKASELSVL CDAEVGLIVF SPRGRLYQFA SATELQETID RYLNHTKGTP ANLKVDVPGI 60 EQKKLMDQIS ELREKERNLM KENEVLRDQA Y

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	71	76	LREKER

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462894627

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP098509	1e-51	FP098509.1 Phyllostachys edulis cDNA clone: bphylf003i12, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022680391.1	1e-30	MADS-box protein SOC1 isoform X3
Swissprot	P0C5B2	4e-19	MAD56_ORYSJ; MADS-box transcription factor 56
TrEMBL	I1HW38	2e-34	I1HW38_BRADI; MADS-box transcription factor 22
STRING	BRADI3G00730.1	3e-35	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45660.1	8e-21	AGAMOUS-like 20

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Bai Z, et al. The impact and origin of copy number variations in the Oryza species. BMC Genomics, 2016. 17: p. 261 [PMID:27025496] Shibaya T, et al. Hd18, Encoding Histone Acetylase Related to Arabidopsis FLOWERING LOCUS D, is Involved in the Control of Flowering Time in Rice. Plant Cell Physiol., 2016. 57(9): p. 1828-38 [PMID:27318280] Han Z,Zhang B,Zhao H,Ayaad M,Xing Y Genome-Wide Association Studies Reveal that Diverse Heading Date Genes Respond to Short and Long Day Lengths between Indica and Japonica Rice. Front Plant Sci, 2016. 7: p. 1270 [PMID:27621738]