PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462894813
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HD-ZIP
Protein Properties Length: 314aa    MW: 34633.5 Da    PI: 6.5883
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462894813genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.91.7e-18152206256
                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                rk+ +++keq   Le  F+++++++ e++ +LA++l+L  rqV vWFqNrRa+ k
  462894813 152 RKKLRLSKEQSAFLEHSFKEHSTLTPEQKSDLARQLNLRPRQVEVWFQNRRARTK 206
                678899***********************************************98 PP
2HD-ZIP_I/II124.35.6e-40152241191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rlskeq+++LE+sF+e+++L+pe+K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr +++l++en+rL++ev+eLr +l
    462894813 152 RKKLRLSKEQSAFLEHSFKEHSTLTPEQKSDLARQLNLRPRQVEVWFQNRRARTKLKQTEMDCEYLKRFCESLTQENRRLQREVAELR-AL 241
                  69*************************************************************************************9.44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.7E-19134206IPR009057Homeodomain-like
PROSITE profilePS5007117.346148208IPR001356Homeobox domain
SMARTSM003895.2E-17150212IPR001356Homeobox domain
SuperFamilySSF466891.3E-18150217IPR009057Homeodomain-like
PfamPF000466.8E-16152206IPR001356Homeobox domain
CDDcd000861.31E-17152209No hitNo description
PROSITE patternPS000270183206IPR017970Homeobox, conserved site
SMARTSM003401.5E-22208251IPR003106Leucine zipper, homeobox-associated
PfamPF021835.3E-10208241IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MELELSLGDS SAPAKGTFTT DLTSEHAGNG VGHELVLHLG VGTVKRAEQL EVDNQKTPMQ  60
LEDDEARSQN ESSVGLSLRG HLLPAFADSG SVNSDVSVRG FDVNNSLMDE DEAKMRSLST  120
SSSLQVEVPA RHAADQEVAE DDENGGASGG VRKKLRLSKE QSAFLEHSFK EHSTLTPEQK  180
SDLARQLNLR PRQVEVWFQN RRARTKLKQT EMDCEYLKRF CESLTQENRR LQREVAELRA  240
LRTTYPFYSH LPAGFSAPRG CPSCDNKATP YSTVVTTAIS STVVAPPSSM SLARPHFGQF  300
TIHPVQRRHP SATS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200208RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462894813
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952725.11e-134homeobox-leucine zipper protein HOX7
SwissprotA2X6748e-85HOX7_ORYSI; Homeobox-leucine zipper protein HOX7
TrEMBLA0A3L6QJX51e-136A0A3L6QJX5_PANMI; Homeobox-leucine zipper protein HOX7-like
STRINGSb04g023410.11e-123(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128943035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.12e-60homeobox from Arabidopsis thaliana