PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462894816
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 486aa    MW: 51420.7 Da    PI: 5.153
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462894816genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.64e-12305350555
                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                h+++Er RR++i +++ +L+el+P++      K +Ka++L + ++Y+k Lq
  462894816 305 HSIAERLRREKISDRMKNLQELVPNS-----NKTDKASMLDEIIDYVKFLQ 350
                99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-17298361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.37E-13298354No hitNo description
PROSITE profilePS5088817.441300349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.6E-17302360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-9305350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-14306355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MGGFDPFTPA PAWPQDLVFA GSSWSNSVAP SLADCAEIGF HLQNGSSPAL LNNSAKETVS  60
SLELQEQFLQ ELLQLQGGAM HGLNTEVERA LVAGTLGSAM SLADSASVFC SSNDSSGSEQ  120
SGLPQFLLGE QQVPASSAWS SALLQVSSLV GEETSQSFGF GAVGNGDLLH DACTPDGKKY  180
PQLGNVPSAP LQVHDDAKCN TGKMLSFAPG QQLNANFDNL QINQKEFSGL HHLNLSSLVS  240
GQLSSFNASG AALSPKQTNE VISGINGPSA TFVTQSEVPN GNANGGNGAP KPRIRARRGQ  300
ATDPHSIAER LRREKISDRM KNLQELVPNS NKTDKASMLD EIIDYVKFLQ LQVKVLSMSR  360
LGATEAVVPL LTESQTESSG LLLSPKSGSR KAGGDMLGQS EHRDSAVFER EVVQLMENNM  420
TTAMQYLQSK GLCLMPIALA SAISEQEGTS SMAVPPENRG KGDMKKVPIV MNHFSIAKEM  480
KSTGTA
Cis-element ? help Back to Top
SourceLink
PlantRegMap462894816
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9749564e-77EU974956.1 Zea mays clone 461679 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952733.10.0uncharacterized protein LOC101783147
TrEMBLK3YRP50.0K3YRP5_SETIT; Uncharacterized protein
STRINGSi016939m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32543879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.12e-56LJRHL1-like 2